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[193257_at]

Description B0379.4 /REP_DB=WormBase Gene ID /WP=CE07727 /TR=O02204 /GB=CAB05892.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=S.pombe hypothetical protein C2F7.02C like
Cluster 6grp_total > 65      4grp_total > 01      6grp_cgc > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 57.6
(-3)
A 		94.5
(3)
A 		85
(1.5)
A 		65.2
(-1.8)
A 		37
B 46.3
(-2.1)
A 		36.7
(-3)
A 		61.6
(-0.7)
A 		100.3
(3)
P 		64
C 79.5
(3)
A 		48.2
(-1.8)
A 		40.7
(-3)
A 		75.7
(2.4)
P 		39
avr 61.1
(-2.6) 		59.8
(-3) 		62.4
(-2.2) 		80.4
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 83.7
(3)
A 		5.6
(-3)
A 		55.6
(0.8)
A 		12.3
(-2.5)
A 		26.4
(-1.4)
A 		51.9
(0.6)
A 		78
B 50.6
(-1.6)
A 		86
(3)
P 		63.4
(0.1)
A 		75.4
(1.6)
A 		39.8
(-3)
A 		82.4
(2.5)
P 		46
C 53.5
(-2)
A 		49.4
(-2.4)
A 		70.3
(-0.6)
A 		114.1
(3)
P 		41.6
(-3)
A 		97.5
(1.6)
P 		73
avr 62.6
(0.9) 		47
(-1.4) 		63.1
(0.9) 		67.3
(1.6) 		35.9
(-3) 		77.3
(3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 21
(2.4)
A 		20.5
(2.2)
A 		22.2
(3)
A 		9.5
(-3)
A 		13
B 14.8
(-0.2)
A 		9.1
(-3)
A 		14.3
(-0.5)
A 		21.4
(3)
P 		12
C 26.3
(3)
A 		13.9
(-2.5)
A 		14.2
(-2.4)
A 		12.8
(-3)
P 		14
avr 20.7
(3) 		14.5
(-3) 		16.9
(-0.7) 		14.6
(-2.9) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 15.4
(3)
A 		2
(-3)
A 		12.1
(1.5)
A 		3.1
(-2.5)
A 		8
(-0.3)
A 		12.6
(1.7)
A 		13
B 17.6
(-2.1)
A 		28.6
(2.2)
P 		15.4
(-3)
A 		20
(-1.2)
A 		16.2
(-2.7)
A 		30.7
(3)
P 		15
C 19.8
(-1)
A 		15.1
(-2.5)
A 		17.9
(-1.6)
A 		22.9
(-0)
P 		13.5
(-3)
A 		32.6
(3)
P 		19
avr 17.6
(-0.6) 		15.2
(-1.8) 		15.1
(-1.8) 		15.3
(-1.7) 		12.6
(-3) 		25.3
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193257_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1840
Sequence Type Exemplar sequence
Representative Public ID B0379.4 NCBI
Target Description B0379.4 /REP_DB=WormBase Gene ID /WP=CE07727 /TR=O02204 /GB=CAB05892.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=S.pombe hypothetical protein C2F7.02C like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170917(9), NM_170918(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170917 NCBI Caenorhabditis elegans B0379.4a (B0379.4) mRNA, complete cds. 9/11 None
NM_170918 NCBI Caenorhabditis elegans B0379.4b (B0379.4) mRNA, complete cds. 9/11 None
SNAP00000021510 ENSEMBL cdna:SNAP chromosome:CEL140:I:10094654:10096872:-1 9/11 None
GENEFINDER00000021516 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10094654:10102543:-1 9/11 None
B0379.4a ENSEMBL cdna:known chromosome:CEL140:I:10093833:10110132:-1 gene:B0379.4 9/11 None
B0379.4b ENSEMBL cdna:known chromosome:CEL140:I:10094654:10102600:-1 gene:B0379.4 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10094584-10096803(-) 98.96 100.0
Public Domain and Genome References
Ensembl B0379.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD30428 Hypothetical protein B0379.4a [Caenorhabditis elegans] ref|NP_740911.2| B0379.4a [Caenorhabditis elegans] 0.0
blast CAD30429 Hypothetical protein B0379.4b [Caenorhabditis elegans] ref|NP_740912.2| B0379.4b [Caenorhabditis elegans] 0.0
blast CAE60287 Hypothetical protein CBG03870 [Caenorhabditis briggsae] 0.0
blast CAD30429 Hypothetical protein B0379.4b [Caenorhabditis elegans] ref|NP_740912.2| B0379.4b [Caenorhabditis elegans] 1.0E-169
blast CAD30428 Hypothetical protein B0379.4a [Caenorhabditis elegans] ref|NP_740911.2| B0379.4a [Caenorhabditis elegans] 1.0E-169
Protein Domains
Database ID Description E-Value
Pfam IPR004274 EMBL-EBI NLI interacting factor 9.3E-92
Pfam IPR004274 EMBL-EBI NLI interacting factor 9.4E-92
Pfam IPR004274 EMBL-EBI NLI interacting factor 4.7E-83
Pfam IPR004274 EMBL-EBI NLI interacting factor 9.4E-92
Sequence
Target Sequence 
>C. ELEGANS:193257_AT
attagtgcattcttcgttcaagcccgtgaagaatccggattttgtgattcccgtcgaaat
tgatggtgtcgagcatcaagtatatgtactgaaacgaccgtacgtcgacgagtttcttgc
gaaagttggagaacattttgagtgtattctatttactgcgtcacttgctaagtacgctga
tcctgtggctgatttattggacaagaaacgggtattcagaggacgacttttccgtgaagc
gtgtgtattccataagggtaattatagaaaatcgaatatctcagattccttcatattttt
ttccgagatttttggagaaattgattatcgaaaaatgaaaaacttgcacttttcttcata
ttttccggagaaaatcgaaaaatattatttgagtcgactgggaagaaatctgaatcaaac
tttgattatcgacaattcaccagccagttatgcattccatcctgaaaatgcggtaccagt
gacgacgtggtttgatgatccttcagatacagagcttttggatattcttccatctttgga
gcacttaaacgggttctcaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTAGTGCATTCTTCGTTCAAGCCC 343 13 252 Antisense
ATCCGGATTTTGTGATTCCCGTCGA 300 33 284 Antisense
GACCGTACGTCGACGAGTTTCTTGC 268 383 347 Antisense
TTCTATTTACTGCGTCACTTGCTAA 89 689 398 Antisense
CTAAGTACGCTGATCCTGTGGCTGA 611 225 419 Antisense
GACGACTTTTCCGTGAAGCGTGTGT 331 377 473 Antisense
GATTCCTTCATATTTTTTTCCGAGA 616 433 535 Antisense
AACTTGCACTTTTCTTCATATTTTC 545 137 592 Antisense
TTATCGACAATTCACCAGCCAGTTA 339 681 677 Antisense
CAGCCAGTTATGCATTCCATCCTGA 30 203 692 Antisense
GGAGCACTTAAACGGGTTCTCAAGC 425 515 789 Antisense
Sequence Source Affymetrix Proprietary Database