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[193254_s_at]

Description R160.1 /REP_DB=WormBase Gene ID /WP=CE26382 /GEN=dpy-23 /TR=Q9TZC9 /GB=AAC68739.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=clathrin coat assembly protein
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 03      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 51      6grp_total > 24      4grp_total > 52      6grp_highest_sub > De      6grp_cgc > 31      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 435
1 2 3 4 range
A 657.4
(3)
P 		593.3
(1.9)
P 		560.5
(1.3)
P 		311.4
(-3)
P 		346
B 691.5
(2.4)
P 		721.6
(3)
P 		587.3
(0.4)
P 		412.4
(-3)
P 		309
C 696.1
(2.3)
P 		746.1
(3)
P 		560.7
(0.3)
P 		333.2
(-3)
P 		413
avr 681.7
(2.9) 		687
(3) 		569.5
(0.9) 		352.3
(-3) 		335

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 513
1 2 3 4 5 6 range
A 765.4
(3)
P 		719.4
(2.2)
P 		579.1
(-0.3)
P 		458.6
(-2.5)
P 		456.9
(-2.5)
P 		430.5
(-3)
P 		335
B 816.3
(3)
P 		701.6
(1.6)
P 		733.3
(2)
P 		610.1
(0.5)
P 		417.5
(-1.9)
P 		323.9
(-3)
P 		492
C 837.2
(3)
P 		695
(1.1)
P 		572
(-0.6)
P 		572.8
(-0.6)
P 		398.5
(-3)
P 		435.6
(-2.5)
P 		439
avr 806.3
(3) 		705.3
(1.5) 		628.1
(0.4) 		547.2
(-0.8) 		424.3
(-2.6) 		396.7
(-3) 		410
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 239.4
(3)
P 		128.8
(-0.4)
P 		146.5
(0.1)
P 		45.6
(-3)
P 		194
B 220.5
(3)
P 		178.2
(1.1)
P 		136.1
(-0.8)
P 		87.9
(-3)
P 		133
C 230.4
(3)
P 		214.5
(2.5)
P 		195.4
(1.8)
P 		56.2
(-3)
P 		174
avr 230.1
(3) 		173.8
(1) 		159.3
(0.5) 		63.2
(-3) 		167

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 141.1
(-1.6)
P 		255.9
(3)
P 		126.1
(-2.2)
P 		116.3
(-2.5)
P 		137.9
(-1.7)
P 		104.8
(-3)
P 		151
B 284
(3)
P 		233.5
(1.1)
P 		178.1
(-0.9)
P 		161.6
(-1.5)
P 		169.6
(-1.2)
P 		120.8
(-3)
P 		163
C 310.3
(3)
P 		212.1
(-0)
P 		145.6
(-2.1)
P 		115.2
(-3)
P 		128.9
(-2.6)
P 		145.8
(-2.1)
P 		195
avr 245.1
(3) 		233.8
(2.4) 		149.9
(-1.7) 		131
(-2.6) 		145.5
(-1.9) 		123.8
(-3) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193254_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17072
Sequence Type Exemplar sequence
Representative Public ID R160.1 NCBI
Target Description R160.1 /REP_DB=WormBase Gene ID /WP=CE26382 /GEN=dpy-23 /TR=Q9TZC9 /GB=AAC68739.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=clathrin coat assembly protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029694(11), NM_171670(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029694 NCBI Caenorhabditis elegans DumPY : shorter than wild-type family member (dpy-23) (dpy-23) mRNA, complete cds. 11/11 None
NM_171670 NCBI Caenorhabditis elegans DumPY : shorter than wild-type family member (dpy-23) (dpy-23) mRNA, complete cds. 11/11 A 
SNAP00000044074 ENSEMBL cdna:SNAP chromosome:CEL140:X:4389349:4393139:1 10/11 None
GENEFINDER00000044076 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4389349:4395649:1 10/11 None
R160.1b.1 ENSEMBL cdna:known chromosome:CEL140:X:4389337:4393768:1 gene:R160.1 11/11 None
R160.1b.2 ENSEMBL cdna:known chromosome:CEL140:X:4389338:4393768:1 gene:R160.1 11/11 None
R160.1a ENSEMBL cdna:known chromosome:CEL140:X:4389338:4393774:1 gene:R160.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4389349-4393506(+) 100.0 100.0
Public Domain and Genome References
Ensembl R160.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP13778 Dumpy : shorter than wild-type protein 23, isoform b [Caenorhabditis elegans] ref|NP_001024865.1| DumPY : shorter than wild-type family member (dpy-23) [Caenorhabditis elegans] 0.0
blast AAP13777 Dumpy : shorter than wild-type protein 23, isoform a [Caenorhabditis elegans] ref|NP_741770.1| DumPY : shorter than wild-type family member (dpy-23) [Caenorhabditis elegans] sp|P35603|AP50_CAEEL Clathrin coat assembly protein AP50 (Clathrin coat-associated protein AP50) (Plasma membrane adaptor AP-2 50 kDa protein) (Clathrin assembly protein complex 2 medium chain) (Dumpy protein 23) 0.0
blast CAE68591 Hypothetical protein CBG14461 [Caenorhabditis briggsae] 0.0
blast AAA27981 clathrin-associated protein homologue 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001392 EMBL-EBI Clathrin adaptor complex, medium chain 1.0E-126
Pfam IPR001392 EMBL-EBI Clathrin adaptor complex, medium chain 1.0E-126
Pfam IPR001392 EMBL-EBI Clathrin adaptor complex, medium chain 3.8E-37
Pfam IPR001392 EMBL-EBI Clathrin adaptor complex, medium chain 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:193254_S_AT
cgagctgatgagataccgtaccactaaggatatccaactgccattccgtgtgatcccatt
ggttcgtgaagtgtctcgtaacaagatggaagttaaggttgtcgtcaagtctaacttcaa
gccatcccttcttgctcaaaagctcgaagttcgcattccaaccccaccaaatacatccgg
cgttcaacttatttgcatgaagggaaaagccaagtacaaggcaggcgagaatgccattgt
gtggaaaataaagcgtatggccggaatgaaggaaagccaaatttctgcggaaatcgatct
tctctcaactggaaacgttgagaagaagaaatggaatcgcccaccggtcagcatgaactt
tgaggttccgtttgctccatctggactcaaagttcgctacttgaaggtgtttgagccaaa
actgaactattcggatcatgacgtcatcaaatgggttcgttacattggaagatcgggact
acgtctcgataagcattttcgcatgcttataattccatgcattttccgtgccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAGCTGATGAGATACCGTACCACT 653 249 822 Antisense
TAAGGATATCCAACTGCCATTCCGT 406 635 846 Antisense
CCATTCCGTGTGATCCCATTGGTTC 431 269 862 Antisense
TCAAGTCTAACTTCAAGCCATCCCT 306 633 926 Antisense
AAAGCTCGAAGTTCGCATTCCAACC 292 125 960 Antisense
ACATCCGGCGTTCAACTTATTTGCA 391 99 994 Antisense
ATCGATCTTCTCTCAACTGGAAACG 654 35 1114 Antisense
GAAGAAATGGAATCGCCCACCGGTC 709 339 1146 Antisense
GAACTTTGAGGTTCCGTTTGCTCCA 581 349 1176 Antisense
GCTCCATCTGGACTCAAAGTTCGCT 461 297 1195 Antisense
TAATTCCATGCATTTTCCGTGCCAA 67 635 1331 Antisense
Sequence Source Affymetrix Proprietary Database