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[193252_at] 7TM chemoreceptor (srd-family)

Description F53F4.9 /REP_DB=WormBase Gene ID /WP=CE24998 /GEN=srd-11 /TR=Q20721 /GB=CAB01205.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM chemoreceptor (srd-family)
Cluster 6grp_total > 84      4grp_total > 10      6grp_cgc > 65      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 35.6
(-1.2)
A 		50.2
(-0.2)
A 		7.8
(-3)
A 		99.5
(3)
A 		92
B 7.2
(-3)
A 		26.4
(-1.6)
A 		55.2
(0.5)
A 		88.8
(3)
A 		82
C 31.3
(-2.5)
A 		16.7
(-3)
A 		19.8
(-2.9)
A 		187.2
(3)
A 		171
avr 24.7
(-3) 		31.1
(-2.6) 		27.6
(-2.8) 		125.2
(3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 6.8
(-3)
A 		40.8
(-0.2)
A 		7.1
(-3)
A 		21.5
(-1.8)
A 		34.2
(-0.8)
A 		80.8
(3)
A 		74
B 19.1
(-3)
A 		27.7
(-2.2)
A 		44.2
(-0.6)
A 		81.6
(3)
A 		33.9
(-1.6)
A 		33.5
(-1.6)
A 		63
C 6.2
(-3)
A 		45.3
(3)
A 		31.6
(0.9)
A 		9.5
(-2.5)
A 		42.7
(2.6)
A 		11.1
(-2.2)
A 		39
avr 10.7
(-3) 		37.9
(2.2) 		27.6
(0.3) 		37.5
(2.2) 		36.9
(2.1) 		41.8
(3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 13
(2.2)
A 		10.9
(1.2)
A 		2
(-3)
A 		14.6
(3)
A 		13
B 2.3
(-3)
A 		6.5
(-1.5)
A 		12.8
(0.8)
A 		18.9
(3)
A 		17
C 10.4
(-1.7)
A 		4.8
(-3)
A 		6.9
(-2.5)
A 		31.6
(3)
A 		27
avr 8.6
(-2.4) 		7.4
(-2.9) 		7.2
(-3) 		21.7
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 1.3
(-3)
A 		14.5
(1.3)
A 		1.6
(-2.9)
A 		5.4
(-1.7)
A 		10.3
(-0.1)
A 		19.7
(3)
A 		18
B 6.6
(-3)
A 		9.2
(-2)
A 		10.7
(-1.4)
A 		21.6
(3)
A 		13.8
(-0.1)
A 		12.5
(-0.6)
A 		15
C 2.3
(-2.8)
A 		13.8
(3)
A 		8.1
(0.1)
A 		1.9
(-3)
A 		13.8
(3)
A 		3.7
(-2.1)
A 		12
avr 3.4
(-3) 		12.5
(2.9) 		6.8
(-0.8) 		9.6
(1) 		12.6
(3) 		12
(2.6) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193252_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14527
Sequence Type Exemplar sequence
Representative Public ID F53F4.9 NCBI
Target Description F53F4.9 /REP_DB=WormBase Gene ID /WP=CE24998 /GEN=srd-11 /TR=Q20721 /GB=CAB01205.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM chemoreceptor (srd-family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073973(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073973 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-11) (srd-11) mRNA, complete cds. 11/11 None
GENEFINDER00000012457 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13620443:13622278:-1 11/11 None
F53F4.9 ENSEMBL cdna:known chromosome:CEL140:V:13620443:13622278:-1 gene:F53F4.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012442 6/11 Cross Hyb Matching Probes None
SNAP00000012443 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13620442-13622278(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor (srd-family)
Gene Symbol srd-11
Ensembl F53F4.9
Entrez Gene 191801 Entrez gene
SwissProt Q20721 EMBL-EBI
WormBase CE24998 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01205 Hypothetical protein F53F4.9 [Caenorhabditis elegans] ref|NP_506374.1| Serpentine Receptor, class D (delta) family member (srd-11) [Caenorhabditis elegans] 0.0
blast CAE66277 Hypothetical protein CBG11522 [Caenorhabditis briggsae] 1.0E-158
blast CAB01205 Hypothetical protein F53F4.9 [Caenorhabditis elegans] ref|NP_506374.1| Serpentine Receptor, class D (delta) family member (srd-11) [Caenorhabditis elegans] 1.0E-152
blast CAE66277 Hypothetical protein CBG11522 [Caenorhabditis briggsae] 1.0E-119
blast CAE72686 Hypothetical protein CBG19906 [Caenorhabditis briggsae] 5.0E-87
blast CAE72686 Hypothetical protein CBG19906 [Caenorhabditis briggsae] 1.0E-57
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506374.1 7 10-32,45-65,85-107,128-150,185-207,233-255,270-292
F53F4.9 7 10-32,45-65,85-107,128-150,185-207,233-255,270-292
GENEFINDER00000012457 6 7-29,39-58,94-116,195-217,297-314,324-346
Sequence
Target Sequence 
>C. ELEGANS:193252_AT
gtcgtcgaacgatttccggaatatcaacttcaaaacgaaactatttgcggaacaattaat
attattgagttttctgcaatgttcacaattctacatatgacgtgcccaataacaccagtc
tacataactatttggatattaagaaaaaagattattgagaaccttacttctaattcaaag
gatatgtcatcaaaaactaaagaaatgcataagcagctattgaaggctctcacatggcaa
gccatgatccctggcttttacggaatgagcattgtatcttacgtcattgggcaattcttt
ttcaatcaccccgtatttgaatatctcacgctcacaggattcctttttatgcctgttctt
tctccactctcttgcctgatatttattcaaatttaccagaaacgagttctatcatggtgg
tac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGTCGAACGATTTCCGGAATATC 636 471 493 Antisense
ACAATTCTACATATGACGTGCCCAA 216 115 577 Antisense
ACGTGCCCAATAACACCAGTCTACA 491 95 592 Antisense
GCTATTGAAGGCTCTCACATGGCAA 98 305 708 Antisense
CCATGATCCCTGGCTTTTACGGAAT 479 271 734 Antisense
GTATCTTACGTCATTGGGCAATTCT 108 453 766 Antisense
TCTTTTTCAATCACCCCGTATTTGA 510 615 788 Antisense
GAATATCTCACGCTCACAGGATTCC 221 327 811 Antisense
AGGATTCCTTTTTATGCCTGTTCTT 429 53 828 Antisense
TCCACTCTCTTGCCTGATATTTATT 326 589 855 Antisense
GAAACGAGTTCTATCATGGTGGTAC 649 357 891 Antisense
Sequence Source Affymetrix Proprietary Database