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[193251_s_at]

Description F28C6.7A /REP_DB=WormBase Gene ID /WP=CE03278 /GEN=rpl-26 /TR=SW:Q19869 /GB=CAA92674.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ribosomal protein L26 like
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 04      4grp_highest_8_8 > 22      4grp_high_8_8 > 15      6grp_highest_nonorm > 28      6grp_total > 15      4grp_total > 0      6grp_highest_sub > De      6grp_cgc > 21      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10255
1 2 3 4 range
A 13473.4
(-3)
P 		15018.3
(-2)
P 		16865.1
(-0.8)
P 		22854
(3)
P 		9381
B 16197.5
(-0.2)
P 		13484
(-3)
P 		16484
(0)
P 		19395.7
(3)
P 		5912
C 12859.1
(-3)
P 		14057.6
(-2.3)
P 		13887
(-2.4)
P 		23113.9
(3)
P 		10255
avr 14176.7
(-3) 		14186.6
(-3) 		15745.4
(-1.8) 		21787.9
(3) 		7611

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3863
1 2 3 4 5 6 range
A 11693.3
(3)
P 		10317.4
(0.5)
P 		10041.9
(0)
P 		10020.1
(-0)
P 		8349.1
(-3)
P 		9026.9
(-1.8)
P 		3344
B 10828.1
(3)
P 		10038.4
(1.4)
P 		10045.3
(1.4)
P 		8228
(-2.3)
P 		9489.7
(0.3)
P 		7878.6
(-3)
P 		2950
C 10755.4
(2.6)
P 		10988.1
(3)
P 		10538.1
(2.1)
P 		7830.2
(-3)
P 		10017
(1.2)
P 		9285.5
(-0.2)
P 		3158
avr 11092.3
(3) 		10448
(1.4) 		10208.4
(0.8) 		8692.8
(-3) 		9285.3
(-1.5) 		8730.3
(-2.9) 		2400
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1905
1 2 3 4 range
A 4905.7
(3)
P 		3260.1
(-3)
P 		4408.9
(1.2)
P 		3345.4
(-2.7)
P 		1646
B 5165.2
(3)
P 		3330.2
(-3)
P 		3819.7
(-1.4)
P 		4133.2
(-0.4)
P 		1835
C 4256.7
(-0.7)
P 		4041.6
(-2.1)
P 		4840
(3)
P 		3897.4
(-3)
P 		943
avr 4775.9
(3) 		3544
(-3) 		4356.2
(1) 		3792
(-1.8) 		1232

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2412
1 2 3 4 5 6 range
A 2155.6
(-3)
P 		3669.4
(3)
P 		2186.9
(-2.9)
P 		2541.3
(-1.5)
P 		2519.4
(-1.6)
P 		2197.8
(-2.8)
P 		1514
B 3767.6
(2.7)
P 		3341.4
(1.2)
P 		2439.3
(-2.1)
P 		2179.3
(-3)
P 		3855.5
(3)
P 		2937.9
(-0.3)
P 		1676
C 3986.5
(3)
P 		3352.8
(1.4)
P 		2682.1
(-0.2)
P 		1574.7
(-3)
P 		3241.4
(1.1)
P 		3108.4
(0.8)
P 		2412
avr 3303.2
(2.3) 		3454.5
(3) 		2436.1
(-1.5) 		2098.4
(-3) 		3205.4
(1.9) 		2748
(-0.1) 		1356
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193251_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2686
Sequence Type Exemplar sequence
Representative Public ID F28C6.7A NCBI
Target Description F28C6.7A /REP_DB=WormBase Gene ID /WP=CE03278 /GEN=rpl-26 /TR=SW:Q19869 /GB=CAA92674.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ribosomal protein L26 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063422(11), NM_182165(11), NM_063423(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063422 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-26) (rpl-26) mRNA, complete cds. 11/11 None
NM_182165 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-26) (rpl-26) mRNA, complete cds. 11/11 None
NM_063423 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-26) (rpl-26) mRNA, complete cds. 11/11 None
SNAP00000038094 ENSEMBL cdna:SNAP chromosome:CEL140:II:8602715:8603469:1 11/11 None
GENEFINDER00000038104 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8602715:8603469:1 11/11 None
F28C6.7a.2 ENSEMBL cdna:known chromosome:CEL140:II:8602707:8603504:1 gene:F28C6.7 11/11 None
F28C6.7a.1 ENSEMBL cdna:known chromosome:CEL140:II:8602709:8603504:1 gene:F28C6.7 11/11 None
F28C6.7c ENSEMBL cdna:known chromosome:CEL140:II:8602709:8603503:1 gene:F28C6.7 11/11 None
F28C6.7b ENSEMBL cdna:known chromosome:CEL140:II:8602709:8603486:1 gene:F28C6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8602711-8603466(+) 100.0 100.0
Public Domain and Genome References
Ensembl F28C6.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92674 Hypothetical protein F28C6.7a [Caenorhabditis elegans] ref|NP_495823.1| Ribosomal Protein, Large subunit family member (rpl-26) [Caenorhabditis elegans] sp|Q19869|RL26_CAEEL 60S ribosomal protein L26 3.0E-76
blast CAE57569 Hypothetical protein CBG00547 [Caenorhabditis briggsae] 3.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR005824 EMBL-EBI KOW 3.5E-9
Sequence
Target Sequence 
>C. ELEGANS:193251_S_AT
ttcgtctccagcgattccggaaagagccgcaaggcccacttcaacgctccatcccacgag
cgcagacgcatcatgtctgccccactcaccaaggagctccgcaccaagcacggaatccgt
gctattccaatcagaaccgatgatgaggtcgtcgttatgcgcggacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGTCTCCAGCGATTCCGGAAAGA 380 695 28 Antisense
GTCTCCAGCGATTCCGGAAAGAGCC 365 471 31 Antisense
TTCCGGAAAGAGCCGCAAGGCCCAC 647 693 42 Antisense
TCCCACGAGCGCAGACGCATCATGT 14 599 79 Antisense
AGCGCAGACGCATCATGTCTGCCCC 191 83 86 Antisense
TCCGCACCAAGCACGGAATCCGTGC 414 595 125 Antisense
GCACGGAATCCGTGCTATTCCAATC 407 315 135 Antisense
ATCCGTGCTATTCCAATCAGAACCG 138 39 142 Antisense
GTGCTATTCCAATCAGAACCGATGA 200 479 146 Antisense
GAACCGATGATGAGGTCGTCGTTAT 142 347 161 Antisense
TGAGGTCGTCGTTATGCGCGGACGC 439 565 171 Antisense
Sequence Source Affymetrix Proprietary Database