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[193249_at] paired-type homeobox protein

Description T26C11.5 /REP_DB=WormBase Gene ID /WP=CE05024 /GEN=ceh-41 /TR=Q22810 /GB=AAC48214.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=paired-type homeobox protein
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 03      4grp_high_8_8 > 26      6grp_highest_nonorm > 90      6grp_total > 06      4grp_total > 45      6grp_highest_sub > De      6grp_cgc > 21      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 183.9
(0.9)
P 		158.6
(-3)
P 		164.7
(-2.1)
P 		197.5
(3)
P 		39
B 163.8
(1.5)
P 		175.9
(3)
P 		145.1
(-0.8)
A 		127.5
(-3)
P 		48
C 175.5
(3)
P 		150
(0.7)
P 		125.5
(-1.5)
P 		108.6
(-3)
A 		67
avr 174.4
(3) 		161.5
(0.4) 		145.1
(-2.9) 		144.5
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 245.2
(3)
P 		190.2
(0.3)
P 		127.9
(-2.9)
P 		177.1
(-0.4)
P 		125.2
(-3)
P 		159.2
(-1.3)
P 		120
B 185
(2.5)
P 		180.7
(2.1)
P 		191.2
(3)
P 		122
(-3)
P 		133.3
(-2)
P 		137.2
(-1.7)
P 		69
C 240.5
(3)
P 		177.9
(0.1)
P 		198.4
(1)
P 		111.3
(-3)
P 		152.9
(-1.1)
P 		130.9
(-2.1)
P 		129
avr 223.6
(3) 		182.9
(0.2) 		172.5
(-0.5) 		136.8
(-3) 		137.1
(-3) 		142.4
(-2.6) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 67
(3)
P 		34.4
(-2.1)
P 		43.1
(-0.8)
P 		28.9
(-3)
P 		38
B 52.2
(3)
P 		43.4
(0.9)
P 		33.6
(-1.5)
A 		27.2
(-3)
P 		25
C 58.1
(3)
P 		43.1
(0.7)
P 		43.8
(0.8)
P 		18.3
(-3)
A 		40
avr 59.1
(3) 		40.3
(-0.3) 		40.2
(-0.3) 		24.8
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 45.2
(-0.4)
P 		67.6
(3)
P 		27.9
(-3)
P 		44.9
(-0.4)
P 		37.8
(-1.5)
P 		38.8
(-1.4)
P 		40
B 64.4
(3)
P 		60.1
(2.2)
P 		46.4
(-0.4)
P 		32.3
(-3)
P 		54.2
(1.1)
P 		51.1
(0.5)
P 		32
C 89.2
(3)
P 		54.3
(-0.1)
P 		50.5
(-0.5)
P 		22.4
(-3)
P 		49.5
(-0.6)
P 		43.8
(-1.1)
P 		67
avr 66.3
(3) 		60.7
(2) 		41.6
(-1.5) 		33.2
(-3) 		47.2
(-0.5) 		44.6
(-0.9) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193249_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18171
Sequence Type Exemplar sequence
Representative Public ID T26C11.5 NCBI
Target Description T26C11.5 /REP_DB=WormBase Gene ID /WP=CE05024 /GEN=ceh-41 /TR=Q22810 /GB=AAC48214.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=paired-type homeobox protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075939(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075939 NCBI Caenorhabditis elegans C.Elegans Homeobox family member (ceh-41) (ceh-41) mRNA, complete cds. 11/11 None
SNAP00000040394 ENSEMBL cdna:SNAP chromosome:CEL140:X:1847151:1848669:-1 11/11 None
GENEFINDER00000040401 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1847151:1848669:-1 11/11 None
T26C11.5 ENSEMBL cdna:known chromosome:CEL140:X:1846671:1848669:-1 gene:T26C11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1847150-1848669(-) 100.0 100.0
Public Domain and Genome References
Gene Title paired-type homeobox protein
Gene Symbol ceh-41
Ensembl T26C11.5
Entrez Gene 180503 Entrez gene
SwissProt Q22810 EMBL-EBI
WormBase CE05024 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_508340 C.Elegans Homeobox family member (ceh-41) [Caenorhabditis elegans] gb|AAC48214.1| C.elegans homeobox protein 41 [Caenorhabditis elegans] 1.0E-126
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 4.99999987368938E-6
Pfam IPR001356 EMBL-EBI Homeobox 8.4E-14
Sequence
Target Sequence 
>C. ELEGANS:193249_AT
gtcagtgatctcagagccatcagctattgctccagaagtttcagcaactgatagtcttca
aaaagacacaaaaagcgatgaagcttgtattggcaacatgactacaaattccgtagaaaa
atcagaagaagaaggggaaaaaagcgatgctcagccgtcaaaccaaggaaacccttccag
acaaaagcaacctccaactggcaagagaaagcgggatgatctgcccgcccgcgaacactc
ggaaacattttcaaatgtagaaggatcatcggaacgttctacgacaagatcacaaagccg
agtcagtcttgacgaggaccgtcagaattcggctccggtccgtcgttcagttgaagcaca
cattcttgtgcagaatgcgactccaactgtggttggcggcaacggctcttcgagttcacc
acccaagaagacaaagagcccattcaccgagcatgaaattgcagtgatgatggctctttt
tgaaatcaacaagtctccaaatcatgaagaagttcaaaaattggctgttcaactgaacct
gggctacagaagcgtggct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAGTGATCTCAGAGCCATCAGCT 254 465 222 Antisense
AGCCATCAGCTATTGCTCCAGAAGT 689 83 236 Antisense
AAAAAGCGATGCTCAGCCGTCAAAC 540 129 360 Antisense
GACAAAAGCAACCTCCAACTGGCAA 703 365 401 Antisense
GAAAGCGGGATGATCTGCCCGCCCG 406 359 428 Antisense
GGATCATCGGAACGTTCTACGACAA 189 511 484 Antisense
AGGACCGTCAGAATTCGGCTCCGGT 8 55 536 Antisense
GCAGAATGCGACTCCAACTGTGGTT 310 313 591 Antisense
CTCTTCGAGTTCACCACCCAAGAAG 652 227 627 Antisense
AAGACAAAGAGCCCATTCACCGAGC 453 153 649 Antisense
GAACCTGGGCTACAGAAGCGTGGCT 160 347 756 Antisense
Sequence Source Affymetrix Proprietary Database