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[193248_at] potassium channel protein like

Description F29F11.4 /REP_DB=WormBase Gene ID /WP=CE05770 /GEN=twk-9 /TR=Q19907 /GB=CAA98271.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=potassium channel protein like
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 21      4grp_high_8_8 > 26      6grp_highest_nonorm > 71      6grp_total > 22      4grp_total > 30      6grp_highest_sub > 01_02_03      6grp_cgc > 71      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 250.1
(-0.9)
P 		223.4
(-2.4)
P 		212.6
(-3)
P 		319.1
(3)
A 		107
B 316.2
(3)
P 		260.7
(1.3)
P 		114.8
(-3)
P 		212.3
(-0.1)
P 		201
C 270.1
(3)
P 		142.1
(-3)
P 		186.9
(-0.9)
P 		231.8
(1.2)
P 		128
avr 278.8
(3) 		208.7
(-0.9) 		171.4
(-3) 		254.4
(1.6) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 350
1 2 3 4 5 6 range
A 493.6
(3)
P 		426.5
(1.7)
P 		444.4
(2)
P 		321.2
(-0.4)
P 		196.3
(-2.9)
P 		193
(-3)
P 		301
B 326.9
(0.7)
P 		421.2
(3)
P 		406.5
(2.6)
P 		302.1
(0)
P 		184.9
(-2.9)
P 		179.9
(-3)
P 		241
C 301.3
(-0.7)
P 		516.2
(3)
P 		498.9
(2.7)
P 		319
(-0.4)
P 		166.6
(-3)
P 		195.4
(-2.5)
P 		350
avr 373.9
(1.2) 		454.6
(3) 		449.9
(2.9) 		314.1
(-0.1) 		182.6
(-3) 		189.4
(-2.9) 		272
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 91
(3)
P 		48.5
(-2.8)
P 		55.6
(-1.8)
P 		46.7
(-3)
A 		44
B 100.8
(3)
P 		64.4
(0.1)
P 		26.6
(-3)
P 		45.2
(-1.5)
P 		74
C 89.4
(3)
P 		40.9
(-2.8)
P 		65.1
(0.1)
P 		39.1
(-3)
P 		50
avr 93.7
(3) 		51.3
(-2.1) 		49.1
(-2.4) 		43.7
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 91
(-0.5)
P 		151.7
(3)
P 		96.8
(-0.1)
P 		81.5
(-1)
P 		59.2
(-2.3)
P 		47
(-3)
P 		105
B 113.7
(0.8)
P 		140.2
(3)
P 		98.7
(-0.4)
P 		80
(-1.9)
P 		75.1
(-2.3)
P 		67.1
(-3)
P 		73
C 111.7
(0.3)
P 		157.5
(3)
P 		127
(1.2)
P 		64.1
(-2.4)
P 		53.9
(-3)
P 		65.4
(-2.3)
P 		104
avr 105.5
(0) 		149.8
(3) 		107.5
(0.2) 		75.2
(-2) 		62.7
(-2.8) 		59.8
(-3) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193248_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13710
Sequence Type Exemplar sequence
Representative Public ID F29F11.4 NCBI
Target Description F29F11.4 /REP_DB=WormBase Gene ID /WP=CE05770 /GEN=twk-9 /TR=Q19907 /GB=CAA98271.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=potassium channel protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073330(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073330 NCBI Caenorhabditis elegans TWiK family of potassium channels family member (twk-12) (twk-12) mRNA, complete cds. 11/11 None
SNAP00000022013 ENSEMBL cdna:SNAP chromosome:CEL140:V:10670170:10673359:1 11/11 None
GENEFINDER00000022019 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10670170:10673359:1 11/11 None
F29F11.4 ENSEMBL cdna:known chromosome:CEL140:V:10670170:10673444:1 gene:F29F11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10670169-10673359(+) 100.0 100.0
Public Domain and Genome References
Gene Title potassium channel protein like
Gene Symbol twk-12
Ensembl F29F11.4
Entrez Gene 192074 Entrez gene
SwissProt Q19907 EMBL-EBI
WormBase CE37366 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5267 potassium channel activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98271 Hypothetical protein F29F11.4 [Caenorhabditis elegans] ref|NP_505731.2| TWiK family of potassium channels family member (twk-12) [Caenorhabditis elegans] 0.0
blast CAE64870 Hypothetical protein CBG09670 [Caenorhabditis briggsae] 0.0
blast CAE70825 Hypothetical protein CBG17601 [Caenorhabditis briggsae] 2.0E-92
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505731.2 5 13-35,142-159,241-263,268-290,297-319
F29F11.4 5 13-35,142-159,241-263,268-290,297-319
SNAP00000022013 5 13-35,117-134,216-238,243-265,272-294
GENEFINDER00000022019 5 13-35,142-159,241-263,268-290,297-319
Sequence
Target Sequence 
>C. ELEGANS:193248_AT
tctgcctggaaataactacggccaactactagatcgcataaaggcaatggaaaaatttaa
gccaaaaaagaacgatcttgattcaaggatgtttgcaaagtttttggaaaacaagaagtt
ggctaagattttagaacaaaccgagttaagagagctggcaacagtatcttgtcaaaccga
tctcagtggattggttgtccaaagaagaaatccaaaaggaagacatgcaagaattggtag
accaggaatgcctccaccacctccatctcgtccattaaatcttgcttcacctttgagaac
tcttttagagaaagaacagaagtatgatgaagatccagaaattcagttaactccaagacg
attgaattcattatcagatattcaaattggaaaactccaaaaaccttttaaaaagaagaa
gagtatgagctttcttgaaatggctcgtaaagtaaaacttggcgtggatgaaaatcttca
acatgctcgccttgtctgtggtttgttacctcaagattttgattctccatcaacttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGCCTGGAAATAACTACGGCCAA 698 609 1392 Antisense
ACTACGGCCAACTACTAGATCGCAT 233 101 1406 Antisense
AGAGAGCTGGCAACAGTATCTTGTC 93 69 1540 Antisense
GTATCTTGTCAAACCGATCTCAGTG 537 453 1555 Antisense
ACCGATCTCAGTGGATTGGTTGTCC 298 89 1567 Antisense
ATTGGTAGACCAGGAATGCCTCCAC 449 3 1624 Antisense
CTCCATCTCGTCCATTAAATCTTGC 122 235 1652 Antisense
AATCTTGCTTCACCTTTGAGAACTC 347 169 1669 Antisense
TGAAAATCTTCAACATGCTCGCCTT 413 573 1860 Antisense
TCGCCTTGTCTGTGGTTTGTTACCT 174 599 1878 Antisense
GATTTTGATTCTCCATCAACTTCCA 649 429 1906 Antisense
Sequence Source Affymetrix Proprietary Database