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[193246_s_at]

Description B0272.5A /REP_DB=WormBase Gene ID /WP=CE07710 /TR=Q17465 /GB=CAA86313.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=endothelial actin-binding protein repeats
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 17      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 10      6grp_total > 06      4grp_total > 46      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1120
1 2 3 4 range
A 1822.5
(3)
P 		1089.6
(-1.5)
P 		846.9
(-3)
P 		939.5
(-2.4)
P 		976
B 1783.2
(3)
P 		1182.5
(-0.5)
P 		760.5
(-3)
P 		985.3
(-1.7)
P 		1023
C 1880.3
(3)
P 		1007
(-1.7)
P 		938
(-2.1)
P 		769.6
(-3)
P 		1111
avr 1828.7
(3) 		1093
(-1.5) 		848.5
(-3) 		898.1
(-2.7) 		980

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1816
1 2 3 4 5 6 range
A 2375.9
(3)
P 		1560.7
(-0.2)
P 		954.6
(-2.6)
P 		876.4
(-2.9)
P 		907.8
(-2.8)
P 		855.7
(-3)
P 		1520
B 2580.7
(3)
P 		1546.4
(-0.4)
P 		1307.1
(-1.2)
P 		1100.7
(-1.9)
P 		764.6
(-3)
P 		828.7
(-2.8)
P 		1816
C 2155.3
(3)
P 		1626.5
(0.6)
P 		1166.6
(-1.4)
P 		840.2
(-2.9)
P 		1099.4
(-1.7)
P 		811.5
(-3)
P 		1344
avr 2370.6
(3) 		1577.9
(-0.1) 		1142.8
(-1.8) 		939.1
(-2.6) 		923.9
(-2.6) 		832
(-3) 		1539
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 534
1 2 3 4 range
A 663.6
(3)
P 		236.5
(-1.9)
P 		221.4
(-2)
P 		137.5
(-3)
P 		526
B 568.6
(3)
P 		292
(-1.2)
P 		176.2
(-3)
P 		210
(-2.5)
P 		392
C 622.4
(3)
P 		289.5
(-1.1)
P 		326.9
(-0.6)
P 		129.8
(-3)
P 		493
avr 618.2
(3) 		272.7
(-1.5) 		241.5
(-1.9) 		159.1
(-3) 		459

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 729
1 2 3 4 5 6 range
A 438
(1)
P 		555.1
(3)
P 		207.9
(-3)
P 		222.3
(-2.8)
P 		273.9
(-1.9)
P 		208.3
(-3)
P 		347
B 898
(3)
P 		514.7
(-0.8)
P 		317.4
(-2.7)
P 		291.5
(-3)
P 		310.7
(-2.8)
P 		309
(-2.8)
P 		607
C 798.9
(3)
P 		496.3
(0.1)
P 		296.9
(-1.8)
P 		169
(-3)
P 		355.7
(-1.2)
P 		271.7
(-2)
P 		630
avr 711.6
(3) 		522
(0.6) 		274.1
(-2.4) 		227.6
(-3) 		313.4
(-1.9) 		263
(-2.6) 		484
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193246_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16682
Sequence Type Exemplar sequence
Representative Public ID B0272.5A NCBI
Target Description B0272.5A /REP_DB=WormBase Gene ID /WP=CE07710 /TR=Q17465 /GB=CAA86313.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=endothelial actin-binding protein repeats
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077180(11), NM_077179(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077180 NCBI Caenorhabditis elegans C23F12.1b (C23F12.1) mRNA, complete cds. 11/11 A 
NM_077179 NCBI Caenorhabditis elegans C23F12.1a (C23F12.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000029676 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9418029:9426613:1 11/11 None
SNAP00000029669 ENSEMBL cdna:SNAP chromosome:CEL140:X:9420693:9426613:1 11/11 None
C23F12.1a ENSEMBL cdna:known chromosome:CEL140:X:9412606:9426613:1 gene:C23F12.1 11/11 A 
C23F12.1b ENSEMBL cdna:known chromosome:CEL140:X:9412606:9427184:1 gene:C23F12.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9418018-9426613(+) 99.53 100.0
Public Domain and Genome References
Ensembl C23F12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN60532 Hypothetical protein C23F12.1b [Caenorhabditis elegans] ref|NP_509581.2| C23F12.1b [Caenorhabditis elegans] 0.0
blast CAE69823 Hypothetical protein CBG16142 [Caenorhabditis briggsae] 0.0
blast AAN60531 Hypothetical protein C23F12.1a [Caenorhabditis elegans] ref|NP_509580.2| C23F12.1a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.5.Helicase DNA-binding domain All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; Helicase DNA-binding domain 1.70000004768372
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 3.6E-7
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 9.1E-10
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 7.0E-7
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.1E-8
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.6E-7
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.9E-7
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 4.2E-14
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 2.3E-6
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 3.7E-11
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.5E-5
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.2E-10
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 5.8E-10
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.3E-28
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.5E-6
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 2.6E-13
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 2.3E-6
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 3.7E-11
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.5E-5
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.2E-10
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 5.8E-10
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.3E-28
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 9.1E-10
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 7.0E-7
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.1E-8
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.6E-7
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.9E-7
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.5E-6
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 2.6E-13
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 2.3E-6
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 3.7E-11
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.5E-5
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.2E-10
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 5.8E-10
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.3E-28
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 7.0E-7
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.1E-8
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.6E-7
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.9E-7
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.5E-6
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.3E-18
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 2.3E-6
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 3.7E-11
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.5E-5
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.2E-10
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 5.8E-10
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.3E-28
Sequence
Target Sequence 
>C. ELEGANS:193246_S_AT
agtccattcgttgttcacgtgtctcttccaccagatccgtcaaaagttcgcgtctacggg
ccaggagttgaacatggaattctttctcttttcaaatccaatttcgtcgtggaaacccga
ggtgctggcgctggacaactgactgttcgtgtcagaggaccaaagggagccttcaatgtg
gaaatgcaaagagagaagaagaatgaaagaacgattcactgcaagtatgagccaaaggaa
ccaggggattatcaggtcgaagtgaaatggcacggagagcatgttccaggtagtccattc
cttgtcatgatcgtcgacaccgagaaagaactctcaagataccttcgcggcgaggctccg
tctccaacaccagcaacgccattcattccgccaggatgggtagctccaccacaaatgtac
ccaatgcaaccaggacagcaacgtttcctgccaccaccaggccatttcggaccaatgggt
gttccaagcccatatggatccgttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTCCATTCGTTGTTCACGTGTCTC 637 59 5395 Antisense
GATCCGTCAAAAGTTCGCGTCTACG 643 415 5428 Antisense
TCGCGTCTACGGGCCAGGAGTTGAA 664 591 5442 Antisense
TTCGTCGTGGAAACCCGAGGTGCTG 11 263 5497 Antisense
AGAGCATGTTCCAGGTAGTCCATTC 30 63 5670 Antisense
TAGTCCATTCCTTGTCATGATCGTC 684 653 5685 Antisense
AAGAACTCTCAAGATACCTTCGCGG 674 151 5720 Antisense
TCATTCCGCCAGGATGGGTAGCTCC 209 619 5777 Antisense
GGTAGCTCCACCACAAATGTACCCA 567 503 5793 Antisense
CCAGGACAGCAACGTTTCCTGCCAC 695 271 5824 Antisense
TCCAAGCCCATATGGATCCGTTCCA 410 585 5877 Antisense
Sequence Source Affymetrix Proprietary Database