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[193242_at]

Description F28C1.3 /REP_DB=WormBase Gene ID /WP=CE25864 /TR=Q19857 /GB=CAA99943.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Leucine Rich Repeat (2 copies) (3 domains)
Cluster 6grp_total > 18      4grp_total > 23      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 280
1 2 3 4 range
A 240
(1.6)
A 		78.3
(-1.9)
A 		26.4
(-3)
A 		306.8
(3)
A 		280
B 217.6
(3)
A 		60.5
(-3)
A 		84.6
(-2.1)
A 		125.6
(-0.5)
A 		157
C 277.2
(3)
A 		166.5
(-0.5)
A 		87.9
(-3)
A 		180.2
(-0.1)
A 		189
avr 244.9
(3) 		101.8
(-1.8) 		66.3
(-3) 		204.2
(1.6) 		179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 257
1 2 3 4 5 6 range
A 237.1
(3)
A 		191.2
(1.3)
A 		78.4
(-3)
A 		142.5
(-0.6)
A 		105.7
(-2)
A 		204.3
(1.8)
A 		159
B 148.1
(-0.5)
A 		191.2
(3)
A 		133.8
(-1.6)
A 		116.6
(-3)
A 		169.6
(1.3)
A 		124.2
(-2.4)
A 		75
C 335.5
(3)
A 		98.1
(-3)
A 		156.8
(-1.5)
A 		207
(-0.2)
A 		109
(-2.7)
A 		129.1
(-2.2)
A 		237
avr 240.2
(3) 		160.2
(-1.1) 		123
(-3) 		155.4
(-1.3) 		128.1
(-2.7) 		152.5
(-1.5) 		117
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 87.4
(3)
A 		17
(-2.2)
A 		6.9
(-3)
A 		44.9
(-0.2)
A 		81
B 69.4
(3)
A 		14.9
(-3)
A 		19.6
(-2.5)
A 		26.8
(-1.7)
A 		55
C 91.8
(3)
A 		47.9
(-1.3)
A 		30.7
(-3)
A 		30.4
(-3)
A 		61
avr 82.9
(3) 		26.6
(-2.3) 		19.1
(-3) 		34
(-1.6) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 43.7
(0.1)
A 		68
(3)
A 		17.1
(-3)
A 		36.1
(-0.8)
A 		31.9
(-1.3)
A 		49.8
(0.9)
A 		51
B 51.5
(0.3)
A 		63.7
(2.2)
A 		32.5
(-2.7)
A 		30.9
(-3)
A 		68.9
(3)
A 		46.3
(-0.6)
A 		38
C 124.4
(3)
A 		29.9
(-3)
A 		39.9
(-2.4)
A 		41.6
(-2.3)
A 		35.3
(-2.7)
A 		43.2
(-2.2)
A 		95
avr 73.2
(3) 		53.9
(0.3) 		29.8
(-3) 		36.2
(-2.1) 		45.4
(-0.8) 		46.4
(-0.7) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193242_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14207
Sequence Type Exemplar sequence
Representative Public ID F28C1.3 NCBI
Target Description F28C1.3 /REP_DB=WormBase Gene ID /WP=CE25864 /TR=Q19857 /GB=CAA99943.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Leucine Rich Repeat (2 copies) (3 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073725(11), NM_182397(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073725 NCBI Caenorhabditis elegans F28C1.3a (F28C1.3) mRNA, complete cds. 11/11 None
NM_182397 NCBI Caenorhabditis elegans F28C1.3b (F28C1.3) mRNA, complete cds. 11/11 None
GENEFINDER00000021806 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12474372:12475298:1 10/11 None
F28C1.3a ENSEMBL cdna:known chromosome:CEL140:V:12471271:12476123:1 gene:F28C1.3 11/11 None
F28C1.3b ENSEMBL cdna:known chromosome:CEL140:V:12471460:12476122:1 gene:F28C1.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021792 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12471791-12475298(+) 100.0 100.0
Public Domain and Genome References
Ensembl F28C1.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99943 Hypothetical protein F28C1.3a [Caenorhabditis elegans] emb|CAA99846.3| Hypothetical protein F28C1.3a [Caenorhabditis elegans] ref|NP_506126.2| F28C1.3a [Caenorhabditis elegans] 0.0
blast CAD54158 Hypothetical protein F28C1.3b [Caenorhabditis elegans] emb|CAD54134.1| Hypothetical protein F28C1.3b [Caenorhabditis elegans] ref|NP_872197.1| F28C1.3b [Caenorhabditis elegans] 0.0
blast CAE75495 Hypothetical protein CBG23501 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.31
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.054
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.91
Sequence
Target Sequence 
>C. ELEGANS:193242_AT
gtccttcgaccttggccataggaataccaattattggaagtgttccagcaggtccatctt
ctgctccacttatattagttgaagatcataaagatgggcccatcacaagcaatcaaatat
cggacactgaaaggcgaatatcagaagaaattgaacgtcagaagaaggacgaacaagaaa
tcgaaaaatcgtgtcgatcagtaataagagacttgctaaactatgtggagtacgaggaaa
agtcgcaggttgaacggaaagcctcactgcttcttcgaaatacattcagccgtccgaatc
ctgaagagctgctaagaaatttgcgtttatctgaagctactggatcaacgactccaagaa
ctccattgacaccttccaggtatgttcaggtttttaatattaattcatttctaaagttat
attttatcaaagcgtgtattttaagagttcttgaaattgccgaggagcttgaaggcgagt
cagatgaacaaatttgtcagtcagttattcgttgccttgttcgagatgttcttcaggccg
agaagaacgaacttcgatctacacttgatcgtcgtcgtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCTTCGACCTTGGCCATAGGAAT 251 469 2132 Antisense
TGGAAGTGTTCCAGCAGGTCCATCT 364 547 2166 Antisense
CATCTTCTGCTCCACTTATATTAGT 461 213 2186 Antisense
GCCTCACTGCTTCTTCGAAATACAT 88 283 2392 Antisense
GAAATACATTCAGCCGTCCGAATCC 122 363 2408 Antisense
GTCCGAATCCTGAAGAGCTGCTAAG 26 477 2423 Antisense
GACTCCAAGAACTCCATTGACACCT 382 375 2481 Antisense
GACACCTTCCAGGTATGTTCAGGTT 244 367 2499 Antisense
GTCAGTCAGTTATTCGTTGCCTTGT 104 467 2627 Antisense
CGTTGCCTTGTTCGAGATGTTCTTC 129 249 2641 Antisense
GATCTACACTTGATCGTCGTCGTCG 528 419 2687 Antisense
Sequence Source Affymetrix Proprietary Database