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[193241_at] Leucine Rich Repeat (2 copies) (4 domains)

Description K07G5.1 /REP_DB=WormBase Gene ID /WP=CE06129 /TR=Q21301 /GB=CAA95828.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Leucine Rich Repeat (2 copies) (4 domains)
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 67      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 84      6grp_total > 59      4grp_total > 63      6grp_highest_sub > Cu      6grp_high1_sub > Da      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 243
1 2 3 4 range
A 592.9
(3)
P 		350.4
(-3)
P 		482.4
(0.3)
P 		440.8
(-0.8)
P 		243
B 551.1
(3)
P 		469.2
(-0.9)
P 		457.3
(-1.5)
P 		426.4
(-3)
P 		125
C 579.4
(3)
P 		445.8
(-1.4)
P 		547.5
(2)
P 		396.3
(-3)
P 		183
avr 574.5
(3) 		421.8
(-3) 		495.7
(-0.1) 		421.2
(-3) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 615
1 2 3 4 5 6 range
A 714.3
(0.4)
P 		647.5
(-0.3)
P 		369.3
(-3)
P 		750.6
(0.7)
P 		632.6
(-0.4)
P 		984.1
(3)
P 		615
B 643.9
(1.5)
P 		525.5
(-1.2)
P 		445.7
(-3)
P 		703.9
(2.9)
P 		613.6
(0.8)
P 		707.5
(3)
P 		262
C 719.1
(2.6)
P 		540
(-3)
P 		634.8
(-0.1)
P 		711.2
(2.3)
P 		631.3
(-0.2)
P 		732.9
(3)
P 		193
avr 692.4
(0.9) 		571
(-1.4) 		483.3
(-3) 		721.9
(1.4) 		625.8
(-0.4) 		808.2
(3) 		325
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 215.9
(3)
P 		76.1
(-2.5)
P 		126.1
(-0.6)
P 		64.5
(-3)
P 		151
B 175.7
(3)
P 		115.9
(-1.2)
P 		106
(-1.9)
P 		90.9
(-3)
P 		85
C 191.8
(3)
P 		128.2
(-0.1)
P 		190.8
(3)
P 		66.8
(-3)
P 		125
avr 194.5
(3) 		106.7
(-1.4) 		141
(0.3) 		74.1
(-3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 131.7
(-1.1)
P 		230.3
(2.6)
P 		80.4
(-3)
P 		190.4
(1.1)
P 		190.9
(1.2)
P 		239.6
(3)
P 		159
B 224.1
(1.5)
P 		174.9
(-0.4)
P 		108.2
(-3)
P 		186.4
(0)
P 		249.3
(2.4)
P 		263.8
(3)
P 		156
C 266.5
(3)
P 		164.8
(-1.9)
P 		161.6
(-2.1)
P 		143
(-3)
P 		204.3
(-0)
P 		245.3
(2)
P 		124
avr 207.4
(1.1) 		190
(0.3) 		116.7
(-3) 		173.3
(-0.4) 		214.8
(1.4) 		249.6
(3) 		133
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193241_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1334
Sequence Type Exemplar sequence
Representative Public ID K07G5.1 NCBI
Target Description K07G5.1 /REP_DB=WormBase Gene ID /WP=CE06129 /TR=Q21301 /GB=CAA95828.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Leucine Rich Repeat (2 copies) (4 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059623(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059623 NCBI Caenorhabditis elegans K07G5.1 (K07G5.1) mRNA, complete cds. 11/11 None
GENEFINDER00000015329 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7159109:7164851:-1 11/11 None
SNAP00000015323 ENSEMBL cdna:SNAP chromosome:CEL140:I:7161042:7164851:-1 11/11 None
K07G5.1 ENSEMBL cdna:known chromosome:CEL140:I:7160603:7164919:-1 gene:K07G5.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7160972-7164782(-) 100.0 100.0
Public Domain and Genome References
Gene Title Leucine Rich Repeat (2 copies) (4 domains)
Ensembl K07G5.1
Entrez Gene 172455 Entrez gene
SwissProt Q21301 EMBL-EBI
WormBase CE06129 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95828 Hypothetical protein K07G5.1 [Caenorhabditis elegans] ref|NP_492024.1| K07G5.1 [Caenorhabditis elegans] 0.0
blast CAE73083 Hypothetical protein CBG20460 [Caenorhabditis briggsae] 0.0
blast CAC35821 Hypothetical protein K07G5.6 [Caenorhabditis elegans] emb|CAC35820.1| Hypothetical protein K07G5.6 [Caenorhabditis elegans] ref|NP_492023.1| K07G5.6 [Caenorhabditis elegans] 1.0E-119
blast XP_419088 PREDICTED: similar to leucine rich repeat containing 16 [Gallus gallus] 3.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.016
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.38
Sequence
Target Sequence 
>C. ELEGANS:193241_AT
cttcagtcctatcacatctacaaaaggcaagaccaaggaaaagaggaggagcttcatcta
ttctaaattcatccctttctgaagacgtgatgatgacaagtaaatcaagtggaggaccag
agaatggagatttggctgatctaattgaagaagttgatgaagttgaacaagaaccaagaa
aagttccaactggtgttcgtgttgctatgataccagatagttccctcatttcacaagtgc
atcttcgtccttcagctgaacgtactctttctgcttcttctgacttctcactgtctccac
gtgaagcttcttctccaacaacaagtaacagtaagatcatgacgtcatcaagtgcttcgg
attctccaccacctttgcctcaacgtaatagagttggacctggcggtgctccacccccat
tacttcctcctaaaccagaacctcgaagtcgtttgattggaatgacgtctccaactacac
ctccacctacagcagatgatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCAGTCCTATCACATCTACAAAA 160 221 2450 Antisense
TCTATTCTAAATTCATCCCTTTCTG 366 615 2506 Antisense
GTGTTCGTGTTGCTATGATACCAGA 498 485 2642 Antisense
ATAGTTCCCTCATTTCACAAGTGCA 17 23 2666 Antisense
TCAGCTGAACGTACTCTTTCTGCTT 419 625 2701 Antisense
GAAGCTTCTTCTCCAACAACAAGTA 643 341 2752 Antisense
GTCATCAAGTGCTTCGGATTCTCCA 352 467 2793 Antisense
AATAGAGTTGGACCTGGCGGTGCTC 611 171 2836 Antisense
TCCTCCTAAACCAGAACCTCGAAGT 370 593 2874 Antisense
TGGAATGACGTCTCCAACTACACCT 612 543 2907 Antisense
CACCTCCACCTACAGCAGATGATGA 593 201 2927 Antisense
Sequence Source Affymetrix Proprietary Database