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[193240_s_at] 3-oxoacyl-[acyl-carrier protein] reductase

Description T02E1.5 /REP_DB=WormBase Gene ID /WP=CE13054 /TR=O02294 /GB=CAB04664.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=3-oxoacyl-(acyl-carrier protein) reductase
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 40      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 35      6grp_total > 52      4grp_total > 48      6grp_highest_sub > 03      6grp_cgc > 92      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1588
1 2 3 4 range
A 1374.7
(-3)
P 		2416.9
(0.9)
P 		2962.4
(3)
P 		1857
(-1.2)
P 		1588
B 1451.9
(-3)
P 		2152.7
(0)
P 		2831
(3)
P 		2148.7
(0)
P 		1379
C 1379.4
(-3)
P 		2255.5
(0.5)
P 		2896
(3)
P 		1709.5
(-1.7)
P 		1517
avr 1402
(-3) 		2275
(0.5) 		2896.5
(3) 		1905.1
(-1) 		1495

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2941
1 2 3 4 5 6 range
A 3117.9
(-2)
P 		2981.3
(-2.2)
P 		5421
(3)
P 		3724.8
(-0.6)
P 		2777.9
(-2.7)
P 		2629.7
(-3)
P 		2791
B 3236.7
(-1.8)
P 		3571.9
(-1.1)
P 		5394.8
(3)
P 		3913.9
(-0.3)
P 		2720.4
(-3)
P 		3072.2
(-2.2)
P 		2674
C 2801.2
(-2)
P 		3743.8
(1)
P 		4282
(2.8)
P 		4359
(3)
P 		2479.8
(-3)
P 		3036.2
(-1.2)
P 		1879
avr 3051.9
(-2) 		3432.3
(-1) 		5032.6
(3) 		3999.2
(0.4) 		2659.4
(-3) 		2912.7
(-2.4) 		2373
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 738
1 2 3 4 range
A 500.5
(-0.3)
P 		524.6
(0)
P 		774.4
(3)
P 		271.8
(-3)
P 		503
B 463
(-2.8)
P 		531.7
(-0.8)
P 		656
(3)
P 		457.9
(-3)
P 		198
C 456.6
(-1.6)
P 		648.5
(-0)
P 		1009.3
(3)
P 		288.2
(-3)
P 		721
avr 473.4
(-1.3) 		568.3
(-0.1) 		813.2
(3) 		339.3
(-3) 		474

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 735
1 2 3 4 5 6 range
A 574.8
(-3)
P 		1060.3
(1.8)
P 		1180.6
(3)
P 		944.7
(0.7)
P 		838.3
(-0.4)
P 		640.2
(-2.4)
P 		606
B 1126.2
(-1)
P 		1188.9
(0.3)
P 		1310
(3)
P 		1036.6
(-3)
P 		1105.3
(-1.5)
P 		1145.6
(-0.6)
P 		273
C 1038.3
(1.2)
P 		1142.4
(3)
P 		1089.9
(2.1)
P 		876.6
(-1.7)
P 		802.4
(-3)
P 		1016.4
(0.8)
P 		340
avr 913.1
(-3) 		1130.5
(1.7) 		1193.5
(3) 		952.6
(-2.2) 		915.3
(-3) 		934.1
(-2.6) 		280
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193240_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1751
Sequence Type Exemplar sequence
Representative Public ID T02E1.5 NCBI
Target Description T02E1.5 /REP_DB=WormBase Gene ID /WP=CE13054 /TR=O02294 /GB=CAB04664.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=3-oxoacyl-(acyl-carrier protein) reductase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059836(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059836 NCBI Caenorhabditis elegans DeHydrogenases, Short chain family member (dhs-3) (dhs-3) mRNA, complete cds. 11/11 None
SNAP00000000253 ENSEMBL cdna:SNAP chromosome:CEL140:I:8220551:8221257:-1 9/11 None
GENEFINDER00000000267 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8220551:8222308:-1 11/11 None
T02E1.5 ENSEMBL cdna:known chromosome:CEL140:I:8220548:8222430:-1 gene:T02E1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8220481-8222361(-) 100.0 100.0
Public Domain and Genome References
Gene Title 3-oxoacyl-[acyl-carrier protein] reductase
Gene Symbol dhs-3
Ensembl T02E1.5
Entrez Gene 172603 Entrez gene
SwissProt O02294 EMBL-EBI
WormBase CE13054 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04664 Hypothetical protein T02E1.5 [Caenorhabditis elegans] ref|NP_492237.1| DeHydrogenases, Short chain family member (dhs-3) [Caenorhabditis elegans] 1.0E-134
blast CAE60525 Hypothetical protein CBG04146 [Caenorhabditis briggsae] 1.0E-114
blast CAB04664 Hypothetical protein T02E1.5 [Caenorhabditis elegans] ref|NP_492237.1| DeHydrogenases, Short chain family member (dhs-3) [Caenorhabditis elegans] 2.0E-99
blast CAE60525 Hypothetical protein CBG04146 [Caenorhabditis briggsae] 2.0E-92
blast CAB04664 Hypothetical protein T02E1.5 [Caenorhabditis elegans] ref|NP_492237.1| DeHydrogenases, Short chain family member (dhs-3) [Caenorhabditis elegans] 3.0E-80
blast CAE60525 Hypothetical protein CBG04146 [Caenorhabditis briggsae] 6.0E-75
blast CAE75260 Hypothetical protein CBG23222 [Caenorhabditis briggsae] 7.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 6.2E-31
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 8.4E-13
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 3.7E-18
Sequence
Target Sequence 
>C. ELEGANS:193240_S_AT
taccaaaaatttccttcccggcatgctcgagtcgaataaagggcatattgtaacaattgc
ttcaatggctggaaagtgtggtgttgctggattggtagattactgtgcatccaaacacgg
agctgttggttttaatgactctcttgcgtctgagttgtacgcattaaaaaaggatgtgaa
gactactgtagtctgcccaatttatataaatactggaatgttcgatggaattgccacaaa
atggccaacacttcttccaattctttcaccagaatatgttgtcgattgcataatggaggc
agttctcaccgacagagcattccttgcaattccaaagtttagctacatttttattgcact
tgcaggacttcttccaactga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCAAAAATTTCCTTCCCGGCATG 48 641 273 Antisense
TTCCCGGCATGCTCGAGTCGAATAA 618 695 287 Antisense
ACTGTGCATCCAAACACGGAGCTGT 628 95 374 Antisense
GCTGTTGGTTTTAATGACTCTCTTG 33 297 394 Antisense
GACTCTCTTGCGTCTGAGTTGTACG 352 373 409 Antisense
ACTACTGTAGTCTGCCCAATTTATA 663 101 454 Antisense
AATGGCCAACACTTCTTCCAATTCT 503 161 512 Antisense
TAATGGAGGCAGTTCTCACCGACAG 173 637 563 Antisense
GACAGAGCATTCCTTGCAATTCCAA 343 369 583 Antisense
GCTACATTTTTATTGCACTTGCAGG 170 303 614 Antisense
CACTTGCAGGACTTCTTCCAACTGA 616 195 629 Antisense
Sequence Source Affymetrix Proprietary Database