[Home] | [Total List]

[193233_at] cytochrome oxidase biogenesis protein like

Description C01A2.3 /REP_DB=WormBase Gene ID /WP=CE07785 /TR=O02207 /GB=CAB02698.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=cytochrome oxidase biogenesis protein like
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 12      4grp_high_8_8 > 60      6grp_highest_nonorm > 70      6grp_total > 22      4grp_total > 59      6grp_highest_sub > 01_02_03      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 425
1 2 3 4 range
A 370.5
(1.7)
P 		439.2
(2.9)
P 		442.8
(3)
P 		119.6
(-3)
A 		323
B 323.5
(0.3)
P 		388.3
(1.2)
P 		509.4
(3)
P 		103.3
(-3)
P 		406
C 425.1
(1.5)
P 		470.5
(2.2)
P 		528.1
(3)
P 		117.9
(-3)
P 		410
avr 373
(1.1) 		432.7
(2) 		493.4
(3) 		113.6
(-3) 		380

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 271
1 2 3 4 5 6 range
A 279.2
(0.3)
P 		346.9
(3)
P 		328.5
(2.3)
P 		257.6
(-0.5)
P 		194.9
(-3)
P 		209.1
(-2.4)
P 		152
B 281
(1.3)
P 		331.1
(3)
P 		310
(2.3)
P 		258.3
(0.6)
P 		192.3
(-1.7)
P 		152.2
(-3)
P 		179
C 422.9
(3)
P 		326
(0.6)
P 		335.4
(0.8)
P 		184.4
(-2.9)
P 		240.9
(-1.5)
P 		181.4
(-3)
P 		242
avr 327.7
(2.7) 		334.7
(3) 		324.6
(2.6) 		233.4
(-1) 		209.4
(-1.9) 		180.9
(-3) 		154
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 134.9
(3)
P 		95.3
(1)
P 		115.7
(2)
P 		17.5
(-3)
A 		117
B 103.2
(2.1)
P 		95.9
(1.6)
P 		118
(3)
P 		22
(-3)
P 		96
C 140.7
(1.4)
P 		135.3
(1.2)
P 		184.1
(3)
P 		19.9
(-3)
P 		164
avr 126.3
(2.3) 		108.8
(1.5) 		139.3
(3) 		19.8
(-3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 51.5
(-3)
P 		123.4
(3)
P 		71.5
(-1.3)
P 		65.3
(-1.8)
P 		58.8
(-2.3)
P 		50.9
(-3)
P 		73
B 97.8
(1.6)
P 		110.2
(3)
P 		75.3
(-0.9)
P 		68.4
(-1.7)
P 		78.1
(-0.6)
P 		56.8
(-3)
P 		53
C 156.7
(3)
P 		99.5
(0.1)
P 		85.4
(-0.6)
P 		37.1
(-3)
P 		77.9
(-1)
P 		60.7
(-1.8)
P 		120
avr 102
(2) 		111
(3) 		77.4
(-0.7) 		56.9
(-2.9) 		71.6
(-1.3) 		56.1
(-3) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193233_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1016
Sequence Type Exemplar sequence
Representative Public ID C01A2.3 NCBI
Target Description C01A2.3 /REP_DB=WormBase Gene ID /WP=CE07785 /TR=O02207 /GB=CAB02698.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=cytochrome oxidase biogenesis protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060955(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060955 NCBI Caenorhabditis elegans C01A2.3 (C01A2.3) mRNA, complete cds. 11/11 None
GENEFINDER00000025739 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13395384:13399087:1 11/11 None
SNAP00000025717 ENSEMBL cdna:SNAP chromosome:CEL140:I:13395951:13402048:1 11/11 None
C01A2.3 ENSEMBL cdna:known chromosome:CEL140:I:13395938:13399569:1 gene:C01A2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13395881-13398100(+) 100.0 100.0
Public Domain and Genome References
Gene Title cytochrome oxidase biogenesis protein like
Ensembl C01A2.3
Entrez Gene 173207 Entrez gene
SwissProt O02207 EMBL-EBI
WormBase CE38582 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:13503_AT OXA1 protein, putative at
ATH1-121501:263778_AT OXA1 protein, putative at
CANINE:1591536_AT similar to Inner membrane protein OXA1L, mitochondrial precursor (Oxidase assembly 1-like protein) (OXA1-like protein) (OXA1Hs) (Hsa) cfa
CANINE:1589342_X_AT similar to Inner membrane protein OXA1L, mitochondrial precursor (Oxidase assembly 1-like protein) (OXA1-like protein) (OXA1Hs) (Hsa) cfa
CANINE:1587993_X_AT similar to Inner membrane protein OXA1L, mitochondrial precursor (Oxidase assembly 1-like protein) (OXA1-like protein) (OXA1Hs) (Hsa) cfa
CANINE:1585706_X_AT similar to Inner membrane protein OXA1L, mitochondrial precursor (Oxidase assembly 1-like protein) (OXA1-like protein) (OXA1Hs) (Hsa) cfa
CANINE:1586054_X_AT similar to Inner membrane protein OXA1L, mitochondrial precursor (Oxidase assembly 1-like protein) (OXA1-like protein) (OXA1Hs) (Hsa) cfa
CANINE_2:CFA.1499.1.A1_AT similar to Inner membrane protein OXA1L, mitochondrial precursor (Oxidase assembly 1-like protein) (OXA1-like protein) (OXA1Hs) (Hsa) cfa
CANINE_2:CFAAFFX.17401.1.S1_AT similar to Inner membrane protein OXA1L, mitochondrial precursor (Oxidase assembly 1-like protein) (OXA1-like protein) (OXA1Hs) (Hsa) cfa
CANINE_2:CFAAFFX.17401.1.S1_S_AT similar to Inner membrane protein OXA1L, mitochondrial precursor (Oxidase assembly 1-like protein) (OXA1-like protein) (OXA1Hs) (Hsa) cfa
DROSOPHILA_2:1627726_A_AT dm
DROSGENOME1:151840_AT dm
HG-U133_PLUS_2:208717_AT oxidase (cytochrome c) assembly 1-like hs
HG-U133A:208717_AT oxidase (cytochrome c) assembly 1-like hs
HG-FOCUS:208717_AT oxidase (cytochrome c) assembly 1-like hs
HG-U133A_2:208717_AT oxidase (cytochrome c) assembly 1-like hs
HUGENEFL:X80695_AT oxidase (cytochrome c) assembly 1-like hs
U133_X3P:G12804516_3P_AT oxidase (cytochrome c) assembly 1-like hs
HG-U95AV2:39774_AT oxidase (cytochrome c) assembly 1-like hs
MU11KSUBA:AA734412_AT oxidase assembly 1-like mm
MG-U74BV2:109683_AT oxidase assembly 1-like mm
MG-U74CV2:169926_AT oxidase assembly 1-like mm
MOE430A:1423738_AT oxidase assembly 1-like mm
MOUSE430A_2:1423738_AT oxidase assembly 1-like mm
MOUSE430_2:1423738_AT oxidase assembly 1-like mm
MOE430A:1451088_A_AT oxidase assembly 1-like mm
MOUSE430A_2:1451088_A_AT oxidase assembly 1-like mm
MOUSE430_2:1451088_A_AT oxidase assembly 1-like mm
MOE430B:1456845_AT Oxidase assembly 1-like, mRNA (cDNA clone MGC:28641 IMAGE:4223847) mm
MOUSE430_2:1456845_AT Oxidase assembly 1-like, mRNA (cDNA clone MGC:28641 IMAGE:4223847) mm
MU19KSUBA:TC20791_S_AT Oxidase assembly 1-like, mRNA (cDNA clone MGC:28641 IMAGE:4223847) mm
MU19KSUBB:TC27889_AT Oxidase assembly 1-like, mRNA (cDNA clone MGC:28641 IMAGE:4223847) mm
MU19KSUBB:TC30531_AT Oxidase assembly 1-like, mRNA (cDNA clone MGC:28641 IMAGE:4223847) mm
RAE230A:1372291_AT similar to Oxa1l protein rn
RAT230_2:1372291_AT similar to Oxa1l protein rn
YEAST_2:1773053_AT Translocase of the mitochondrial inner membrane, mediates the insertion of both mitochondrial- and nuclear-encoded proteins from the matrix into the inner membrane, interacts with mitochondrial ribosomes; null is respiratory deficient Sc
Protein Similarities
Method ID Description E-Value
blast CAB02698 Hypothetical protein C01A2.3 [Caenorhabditis elegans] ref|NP_493356.2| C01A2.3 [Caenorhabditis elegans] 0.0
blast T18794 hypothetical protein C01A2.3 - Caenorhabditis elegans 1.0E-180
blast T18794 hypothetical protein C01A2.3 - Caenorhabditis elegans 1.0E-171
blast CAB02698 Hypothetical protein C01A2.3 [Caenorhabditis elegans] ref|NP_493356.2| C01A2.3 [Caenorhabditis elegans] 1.0E-171
blast CAE73029 Hypothetical protein CBG20396 [Caenorhabditis briggsae] 1.0E-146
blast CAE73029 Hypothetical protein CBG20396 [Caenorhabditis briggsae] 1.0E-144
Protein Domains
Database ID Description E-Value
Pfam IPR001708 EMBL-EBI 60 kDa inner membrane protein 1.5E-10
Pfam IPR001708 EMBL-EBI 60 kDa inner membrane protein 1.5E-10
Pfam IPR005024 EMBL-EBI Snf7 5.9E-43
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493356.2 4 104-126,183-200,228-247,267-289
C01A2.3 4 104-126,183-200,228-247,267-289
GENEFINDER00000025739 4 143-165,222-239,267-286,306-328
SNAP00000025717 4 104-126,183-200,228-247,267-289
Sequence
Target Sequence 
>C. ELEGANS:193233_AT
ggagctgtatttgctactcaattctttgcaattaaaaagatggtagttgtcaattatcct
ggattatctactggtggaacattatggtttactgatttaacagcaactgatccatattat
gcacttccattcatctctgcagctactatggctttggtgacaaaagttggaattgaaatg
ggtacatcagctgatcaaatgccaccaattatgcgtgcatttatgacttatggtcttcct
gttgttatttttggagtttcttcacaatttgctacgggtctatgcgtatattggacagct
tccaacgctgtttcgttgatctacgcggccgcattcaaagttgacgcgattcgaaaaata
tttggaattccaccagttgtaccacttccaccgagtgccgtccaaaagaatgccatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCTGTATTTGCTACTCAATTCT 14 521 580 Antisense
ATATTATGCACTTCCATTCATCTCT 543 19 693 Antisense
CATTCATCTCTGCAGCTACTATGGC 207 217 707 Antisense
ACATCAGCTGATCAAATGCCACCAA 579 105 763 Antisense
GACTTATGGTCTTCCTGTTGTTATT 111 373 804 Antisense
GTTTCTTCACAATTTGCTACGGGTC 112 451 835 Antisense
GGACAGCTTCCAACGCTGTTTCGTT 333 525 872 Antisense
CGCTGTTTCGTTGATCTACGCGGCC 433 251 885 Antisense
CTACGCGGCCGCATTCAAAGTTGAC 170 225 900 Antisense
TGGAATTCCACCAGTTGTACCACTT 347 545 942 Antisense
AGTGCCGTCCAAAAGAATGCCATCT 249 61 973 Antisense
Sequence Source Affymetrix Proprietary Database