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[193232_at] Signal Recognition Particle 9Kd protein

Description ZK512.4 /REP_DB=WormBase Gene ID /WP=CE00410 /TR=SW:P34642 /GB=CAA80148.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Signal Recognition Particle 9Kd protein
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 52      4grp_highest_8_8 > 12      4grp_high_8_8 > 30      6grp_highest_nonorm > 33      6grp_total > 30      4grp_total > 33      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1551
1 2 3 4 range
A 1274.4
(-3)
P 		2222.8
(1.1)
P 		2216
(1.1)
P 		2666.3
(3)
P 		1392
B 1115.6
(-3)
P 		2242.4
(2)
P 		2463.7
(3)
P 		2323.1
(2.4)
P 		1348
C 1334.9
(-3)
P 		2036.4
(1.4)
P 		2108.5
(1.9)
P 		2290.5
(3)
P 		956
avr 1241.6
(-3) 		2167.2
(1.7) 		2262.7
(2.2) 		2426.6
(3) 		1185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1424
1 2 3 4 5 6 range
A 1548.9
(-1.1)
P 		1692
(-0.5)
P 		2521.2
(3)
P 		2134
(1.4)
P 		1409.3
(-1.7)
P 		1097.2
(-3)
P 		1424
B 1503
(-2.5)
P 		2035.6
(0.7)
P 		2415.3
(3)
P 		1437.3
(-2.9)
P 		1682.2
(-1.4)
P 		1414.1
(-3)
P 		1001
C 1593.6
(-2)
P 		2046.8
(2.4)
P 		1524.5
(-2.7)
P 		2108.6
(3)
P 		1495.1
(-3)
P 		1767.5
(-0.3)
P 		614
avr 1548.5
(-2) 		1924.8
(1.1) 		2153.7
(3) 		1893.3
(0.9) 		1528.9
(-2.2) 		1426.3
(-3) 		727
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 379
1 2 3 4 range
A 464
(-0.7)
P 		482.5
(-0.1)
P 		579.3
(3)
P 		390.3
(-3)
P 		189
B 355.8
(-3)
P 		553.8
(2.5)
P 		570.9
(3)
P 		495
(0.9)
P 		215
C 441.9
(-2)
P 		585.5
(0.4)
P 		734.9
(3)
P 		386.2
(-3)
P 		349
avr 420.6
(-3) 		540.6
(0.5) 		628.4
(3) 		423.8
(-2.9) 		208

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 416
1 2 3 4 5 6 range
A 285.5
(-2.7)
P 		601.8
(3)
P 		549.1
(2.1)
P 		541.2
(1.9)
P 		425.3
(-0.2)
P 		267.1
(-3)
P 		335
B 523
(-0.2)
P 		677.6
(2.9)
P 		586.5
(1.1)
P 		380.7
(-3)
P 		683.5
(3)
P 		527.3
(-0.1)
P 		303
C 590.7
(2.1)
P 		624.5
(3)
P 		388
(-3)
P 		424
(-2.1)
P 		483.8
(-0.6)
P 		591.7
(2.2)
P 		237
avr 466.4
(-2.4) 		634.6
(3) 		507.9
(-1.1) 		448.6
(-3) 		530.9
(-0.3) 		462
(-2.6) 		186
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193232_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7905
Sequence Type Exemplar sequence
Representative Public ID ZK512.4 NCBI
Target Description ZK512.4 /REP_DB=WormBase Gene ID /WP=CE00410 /TR=SW:P34642 /GB=CAA80148.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Signal Recognition Particle 9Kd protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066625(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066625 NCBI Caenorhabditis elegans ZK512.4 (ZK512.4) mRNA, complete cds. 11/11 None
SNAP00000002536 ENSEMBL cdna:SNAP chromosome:CEL140:III:9145256:9145802:1 11/11 None
GENEFINDER00000002543 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9145256:9145802:1 11/11 None
ZK512.4 ENSEMBL cdna:known chromosome:CEL140:III:9145256:9145802:1 gene:ZK512.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9145251-9145798(+) 100.0 100.0
Public Domain and Genome References
Gene Title Signal Recognition Particle 9Kd protein
Ensembl ZK512.4
Entrez Gene 176293 Entrez gene
SwissProt P34642 EMBL-EBI
WormBase CE00410 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6605 protein targeting inferred from electronic annotation QuickGO AmiGO
45900 negative regulation of translational elongation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5786 signal recognition particle (sensu Eukaryota) inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3723 RNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA80148 Hypothetical protein ZK512.4 [Caenorhabditis elegans] ref|NP_499026.1| ZK512.4 [Caenorhabditis elegans] sp|P34642|SRP09_CAEEL Signal recognition particle 9 kDa protein homolog (SRP9) 2.0E-37
blast CAE62662 Hypothetical protein CBG06800 [Caenorhabditis briggsae] 1.0E-35
blast AAH77407 MGC81742 protein [Xenopus laevis] 1.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR008832 EMBL-EBI Signal recognition particle 9 kDa 1.3E-56
Sequence
Target Sequence 
>C. ELEGANS:193232_AT
atgacatacttcacaagctgggacgaatttgcaaaagctgctgaaaggcttcatagtgcc
aatccggagaaatgcagattcgtcaccaagtacaaccacacaaagggacagctcgtgctg
aagctcaccgatgacgtggtctgccttcaatacagtacgaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACATACTTCACAAGCTGGGACG 680 41 13 Antisense
TTCACAAGCTGGGACGAATTTGCAA 106 685 22 Antisense
AGCTGCTGAAAGGCTTCATAGTGCC 211 81 48 Antisense
AGGCTTCATAGTGCCAATCCGGAGA 337 53 58 Antisense
GGAGAAATGCAGATTCGTCACCAAG 493 519 78 Antisense
TTCGTCACCAAGTACAACCACACAA 527 695 91 Antisense
ACAACCACACAAAGGGACAGCTCGT 675 111 104 Antisense
CAAAGGGACAGCTCGTGCTGAAGCT 131 193 113 Antisense
GAAGCTCACCGATGACGTGGTCTGC 520 341 132 Antisense
CGATGACGTGGTCTGCCTTCAATAC 431 249 141 Antisense
GTCTGCCTTCAATACAGTACGAATC 586 471 151 Antisense
Sequence Source Affymetrix Proprietary Database