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[193231_s_at] Leucine Rich Repeat (2 copies) (2 domains) /// Leucine Rich Repeat (2 copies) (2 domains)

Description B0564.6 /REP_DB=WormBase Gene ID /WP=CE05180 /TR=Q17531 /GB=CAA97768.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Leucine Rich Repeat (2 copies) (2 domains)
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 71      6grp_total > 29      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 287
1 2 3 4 range
A 370.2
(-0.7)
P 		290.8
(-2.4)
P 		262.7
(-3)
P 		549.3
(3)
P 		287
B 410.9
(1.1)
P 		348
(-1.6)
P 		314.1
(-3)
P 		454.5
(3)
P 		140
C 323.3
(-1.7)
P 		271.4
(-3)
P 		294.8
(-2.4)
P 		503.5
(3)
P 		232
avr 368.1
(-0.8) 		303.4
(-2.6) 		290.5
(-3) 		502.4
(3) 		212

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 265
1 2 3 4 5 6 range
A 442.4
(3)
P 		426.2
(2.5)
P 		268.3
(-2.9)
P 		274.9
(-2.6)
P 		438.4
(2.9)
P 		264.3
(-3)
P 		178
B 320.5
(0.6)
P 		354.3
(1.6)
P 		194.7
(-3)
P 		316.1
(0.5)
P 		402.5
(3)
P 		229.4
(-2)
P 		208
C 414.7
(2.5)
P 		315.9
(0.2)
P 		326.3
(0.5)
P 		262.7
(-1)
P 		435.5
(3)
P 		177.5
(-3)
P 		258
avr 392.5
(2) 		365.5
(1.2) 		263.1
(-1.8) 		284.6
(-1.2) 		425.5
(3) 		223.7
(-3) 		202
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 134.8
(3)
P 		63.1
(-3)
P 		68.7
(-2.5)
P 		80.4
(-1.6)
P 		72
B 131
(3)
P 		85.9
(-1.6)
P 		72.8
(-3)
P 		96.9
(-0.5)
P 		58
C 107
(3)
P 		78
(-3)
P 		102.7
(2.1)
P 		84.9
(-1.6)
P 		29
avr 124.3
(3) 		75.7
(-3) 		81.4
(-2.3) 		87.4
(-1.6) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 81.6
(-1.5)
P 		151.6
(3)
P 		58.4
(-3)
P 		69.7
(-2.3)
P 		132.3
(1.8)
P 		64.3
(-2.6)
P 		93
B 111.5
(0.3)
P 		117.9
(0.6)
P 		47.3
(-3)
P 		83.7
(-1.1)
P 		163.5
(3)
P 		85.5
(-1)
P 		116
C 153.7
(3)
P 		96.4
(-0.4)
P 		83.1
(-1.2)
P 		52.8
(-3)
P 		140.9
(2.2)
P 		59.4
(-2.6)
P 		101
avr 115.6
(0.8) 		122
(1.3) 		62.9
(-3) 		68.7
(-2.6) 		145.6
(3) 		69.7
(-2.5) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193231_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9855
Sequence Type Exemplar sequence
Representative Public ID B0564.6 NCBI
Target Description B0564.6 /REP_DB=WormBase Gene ID /WP=CE05180 /TR=Q17531 /GB=CAA97768.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Leucine Rich Repeat (2 copies) (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070126(11), NM_070127(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070126 NCBI Caenorhabditis elegans B0564.6 (B0564.6) mRNA, complete cds. 11/11 None
NM_070127 NCBI Caenorhabditis elegans B0564.9 (B0564.9) mRNA, complete cds. 11/11 None
GENEFINDER00000043365 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13130410:13133200:1 11/11 None
B0564.6 ENSEMBL cdna:known chromosome:CEL140:IV:13130410:13133200:1 gene:B0564.6 11/11 None
B0564.9 ENSEMBL cdna:known chromosome:CEL140:IV:13135214:13138792:1 gene:B0564.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017195 5/11 Cross Hyb Matching Probes None
GENEFINDER00000017210 7/11 Cross Hyb Matching Probes None
SNAP00000043359 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13130415-13133206(+) 100.0 100.0
chrIV:13136007-13138798(+) 100.0 100.0
Public Domain and Genome References
Gene Title Leucine Rich Repeat (2 copies) (2 domains)
Leucine Rich Repeat (2 copies) (2 domains)
Ensembl B0564.6
B0564.9
Entrez Gene 178266 Entrez gene
182046 Entrez gene
SwissProt Q17531 EMBL-EBI
Q17534 EMBL-EBI
WormBase CE05180 Wormbase
CE05182 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97768 Hypothetical protein B0564.6 [Caenorhabditis elegans] ref|NP_502527.1| B0564.6 [Caenorhabditis elegans] 0.0
blast CAA98061 Hypothetical protein B0564.9 [Caenorhabditis elegans] emb|CAA97772.1| Hypothetical protein B0564.9 [Caenorhabditis elegans] ref|NP_502528.1| B0564.9 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.36
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.18
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.36
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.18
Sequence
Target Sequence 
>C. ELEGANS:193231_S_AT
gactgaaaaccctaaacctgcaacgatcgtttatctctccttgtgatctcgaacatattg
ttgccatggccgacacaattactcatttggatctttcgcgttcagttaatctactggatt
gtaggcagattgcagaacttgtcaatttgagacatctatccctgaagaacaacaaagaag
gagttcgagacgattcactacaattgatcatcaagaattgctcaaagttggaagaattat
cgcttgactgttgtgaatatctcactgtgaattcgttgatcactttgggaaacctcaaca
atttgaagcaactttccttacctggaattgtaaacgtcgatgattcggtttgcttgcaaa
tttcaagatgctcgaaactcacatatttgaatattaacttttgcagaagggttcaaaaac
gcggtcttctatgtcttctctcgtgtctcacctctctcgatcaccttgaagtcctcggaa
tccgtgcctactctcatcaccttctcgccttacatatcaactttccaaaaaccatagtct
cagattatgtcgaatcaatatccatcataattccacctattcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTGAAAACCCTAAACCTGCAACG 102 375 665 Antisense
CCTGCAACGATCGTTTATCTCTCCT 51 267 681 Antisense
TATCTCTCCTTGTGATCTCGAACAT 252 659 696 Antisense
TTGCCATGGCCGACACAATTACTCA 149 701 725 Antisense
TACTCATTTGGATCTTTCGCGTTCA 59 645 744 Antisense
TTTGAAGCAACTTTCCTTACCTGGA 342 665 966 Antisense
GTCGATGATTCGGTTTGCTTGCAAA 572 473 1000 Antisense
AAAAACGCGGTCTTCTATGTCTTCT 69 131 1079 Antisense
TCTCGATCACCTTGAAGTCCTCGGA 419 611 1119 Antisense
TCGCCTTACATATCAACTTTCCAAA 274 597 1169 Antisense
TATCCATCATAATTCCACCTATTCC 697 657 1223 Antisense
Sequence Source Affymetrix Proprietary Database