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[193228_at] B.subtilis penicillin-binding protein like

Description C40H5.4 /REP_DB=WormBase Gene ID /WP=CE08652 /TR=Q9U3M7 /GB=CAB03955.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=B.subtilis penicillin-binding protein like
Cluster 6grp_total > 10      4grp_total > 50      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 8.5
(-3)
A 		166.3
(3)
A 		129.8
(1.6)
A 		111.4
(0.9)
A 		158
B 27.8
(-2.7)
A 		195.9
(3)
A 		142.4
(1.2)
A 		17.9
(-3)
A 		178
C 30.5
(-2.2)
A 		157.5
(3)
A 		118.3
(1.4)
A 		11.6
(-3)
A 		146
avr 22.3
(-3) 		173.2
(3) 		130.2
(1.3) 		47
(-2) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 39.5
(-1.5)
A 		87.7
(3)
A 		23.8
(-3)
A 		87.2
(3)
A 		71.6
(1.5)
A 		57.4
(0.2)
A 		64
B 31.7
(-3)
A 		89.1
(2.4)
A 		75.2
(1.1)
A 		84.9
(2)
A 		95.2
(3)
A 		76.5
(1.2)
A 		64
C 67.6
(-1.2)
A 		116.3
(2)
A 		131.5
(3)
A 		40.1
(-3)
A 		85
(-0.1)
A 		52.7
(-2.2)
A 		91
avr 46.3
(-3) 		97.7
(3) 		76.8
(0.6) 		70.7
(-0.2) 		83.9
(1.4) 		62.2
(-1.1) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 3.1
(-3)
A 		36.1
(3)
A 		33.9
(2.6)
A 		16.3
(-0.6)
A 		33
B 8.9
(-2.3)
A 		48.4
(3)
A 		33
(0.9)
A 		3.8
(-3)
A 		45
C 10.1
(-1.9)
A 		45.3
(3)
A 		41.2
(2.4)
A 		1.9
(-3)
A 		43
avr 7.4
(-3) 		43.3
(3) 		36
(1.8) 		7.3
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 7.3
(-2.5)
A 		31.2
(3)
A 		5.2
(-3)
A 		22.1
(0.9)
A 		21.6
(0.8)
A 		14
(-1)
A 		26
B 11
(-3)
A 		29.7
(1.1)
A 		18.2
(-1.4)
A 		22.5
(-0.5)
A 		38.7
(3)
A 		28.5
(0.8)
A 		28
C 25
(0.7)
A 		35.5
(3)
A 		33.5
(2.6)
A 		8.1
(-3)
A 		27.5
(1.2)
A 		17.6
(-0.9)
A 		27
avr 14.4
(-3) 		32.1
(3) 		19
(-1.4) 		17.6
(-1.9) 		29.3
(2.1) 		20
(-1.1) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193228_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17223
Sequence Type Exemplar sequence
Representative Public ID C40H5.4 NCBI
Target Description C40H5.4 /REP_DB=WormBase Gene ID /WP=CE08652 /TR=Q9U3M7 /GB=CAB03955.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=B.subtilis penicillin-binding protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077568(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077568 NCBI Caenorhabditis elegans C40H5.4 (C40H5.4) mRNA, complete cds. 11/11 None
SNAP00000010971 ENSEMBL cdna:SNAP chromosome:CEL140:X:11759183:11764165:1 11/11 None
GENEFINDER00000010978 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11759183:11764165:1 11/11 None
C40H5.4 ENSEMBL cdna:known chromosome:CEL140:X:11761388:11764165:1 gene:C40H5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11761387-11764165(+) 100.0 100.0
Public Domain and Genome References
Gene Title B.subtilis penicillin-binding protein like
Ensembl C40H5.4
Entrez Gene 183371 Entrez gene
SwissProt Q9U3M7 EMBL-EBI
WormBase CE08652 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03955 Hypothetical protein C40H5.4 [Caenorhabditis elegans] ref|NP_509969.1| C40H5.4 [Caenorhabditis elegans] 0.0
blast CAE57335 Hypothetical protein CBG00264 [Caenorhabditis briggsae] 0.0
blast CAB03954 Hypothetical protein C40H5.3 [Caenorhabditis elegans] ref|NP_509968.2| C40H5.3 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001466 EMBL-EBI Beta-lactamase 9.4E-74
Pfam IPR001466 EMBL-EBI Beta-lactamase 9.4E-74
Sequence
Target Sequence 
>C. ELEGANS:193228_AT
attcgcaccatctggcgtttacgatattcaagtggcgagaccgagcatcagcgagcgggc
accacgagaagttatgtattacatgtctggaaatggactgggtttcaatccatacgagat
gcttccacctgagagaatcggtccatggggtggatggattgcgagtcctattcagctgct
tatgtttatgagccgaatcgatgggttctcaaaccgtgaagatattttgagcgacgtggc
cattgccgaacttgccacaccatctcctgcctcaaacgatacctatggattgggctggtc
tttgaacatcatgggattcaacggctggcagcatgacgggcggatgccgggtagtgctgc
tatgttggtcaggctggataatggattggaaatggcagtcactgttaacaaggaatactc
ggaacgcgatttcttccatgaactcggctatgtcctccatcacgttggaaataactgcga
ctggtggaatgatgactacgacctcttccaaaaatcgagacgatcgtctcgtagtgcaac
atca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCGCACCATCTGGCGTTTACGAT 453 3 570 Antisense
CAAGTGGCGAGACCGAGCATCAGCG 640 183 598 Antisense
GAGATGCTTCCACCTGAGAGAATCG 8 397 685 Antisense
GGATTGCGAGTCCTATTCAGCTGCT 163 509 725 Antisense
GTGGCCATTGCCGAACTTGCCACAC 453 491 805 Antisense
CTCCTGCCTCAAACGATACCTATGG 209 235 833 Antisense
TCATGGGATTCAACGGCTGGCAGCA 575 621 878 Antisense
ATGACGGGCGGATGCCGGGTAGTGC 166 43 902 Antisense
ACGCGATTTCTTCCATGAACTCGGC 660 91 993 Antisense
ATGACTACGACCTCTTCCAAAAATC 485 43 1061 Antisense
ACGATCGTCTCGTAGTGCAACATCA 625 93 1089 Antisense
Sequence Source Affymetrix Proprietary Database