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[193226_at] Lectin C-type domain short and long forms

Description T20B3.12 /REP_DB=WormBase Gene ID /WP=CE20094 /TR=Q9XUN6 /GB=CAB04740.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster 6grp_total > 10      4grp_total > 52      6grp_cgc > 65      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 168.9
(3)
A 		166.3
(2.9)
A 		144.4
(1.7)
A 		51.9
(-3)
A 		117
B 109.5
(-0)
A 		167.7
(3)
A 		139.5
(1.5)
P 		52.3
(-3)
A 		115
C 176.8
(3)
M 		137.7
(-0.8)
A 		165.7
(1.9)
M 		115.6
(-3)
A 		61
avr 151.7
(2.6) 		157.2
(3) 		149.9
(2.5) 		73.3
(-3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 102
(-3)
A 		186.2
(3)
M 		155.1
(0.8)
M 		141.3
(-0.2)
A 		112.8
(-2.2)
A 		129.2
(-1.1)
M 		84
B 116.9
(-3)
A 		199.3
(2.7)
M 		203.4
(3)
M 		154.4
(-0.4)
M 		169.5
(0.6)
P 		168.9
(0.6)
A 		87
C 91.6
(-3)
A 		132.3
(0.2)
A 		155.3
(2.1)
A 		126.1
(-0.3)
A 		145.3
(1.3)
A 		167
(3)
A 		75
avr 103.5
(-3) 		172.6
(3) 		171.3
(2.9) 		140.6
(0.2) 		142.5
(0.4) 		155
(1.5) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 61.5
(3)
A 		36.1
(0.2)
A 		37.8
(0.4)
A 		7.6
(-3)
A 		54
B 34.9
(1.7)
A 		41.4
(3)
A 		32.3
(1.2)
P 		11.1
(-3)
A 		30
C 58.5
(3)
M 		39.6
(0.1)
A 		57.8
(2.9)
M 		19.5
(-3)
A 		39
avr 51.6
(3) 		39
(1.1) 		42.6
(1.6) 		12.7
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 18.8
(-3)
A 		66.2
(3)
M 		33.8
(-1.1)
M 		35.8
(-0.8)
A 		34
(-1.1)
A 		31.5
(-1.4)
M 		47
B 40.7
(-3)
A 		66.3
(2.4)
M 		49.4
(-1.1)
M 		40.9
(-3)
M 		68.9
(3)
P 		63
(1.7)
A 		28
C 33.9
(-1.3)
A 		40.4
(-0)
A 		39.5
(-0.2)
A 		25.4
(-3)
A 		47
(1.2)
A 		55.9
(3)
A 		31
avr 31.1
(-3) 		57.6
(3) 		40.9
(-0.8) 		34
(-2.3) 		50
(1.3) 		50.1
(1.3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193226_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14616
Sequence Type Exemplar sequence
Representative Public ID T20B3.12 NCBI
Target Description T20B3.12 /REP_DB=WormBase Gene ID /WP=CE20094 /TR=Q9XUN6 /GB=CAB04740.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074853(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074853 NCBI Caenorhabditis elegans C-type LECtin family member (clec-26) (clec-26) mRNA, complete cds. 11/11 None
SNAP00000028355 ENSEMBL cdna:SNAP chromosome:CEL140:V:16851294:16852658:1 11/11 None
GENEFINDER00000028360 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16851294:16852652:1 11/11 None
T20B3.12 ENSEMBL cdna:known chromosome:CEL140:V:16851294:16852711:1 gene:T20B3.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16851293-16852711(+) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms
Gene Symbol clec-26
Ensembl T20B3.12
Entrez Gene 188626 Entrez gene
SwissProt Q9XUN6 EMBL-EBI
WormBase CE35619 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04740 Hypothetical protein T20B3.12 [Caenorhabditis elegans] ref|NP_507254.2| C-type LECtin family member (clec-26) [Caenorhabditis elegans] 0.0
blast CAB04740 Hypothetical protein T20B3.12 [Caenorhabditis elegans] ref|NP_507254.2| C-type LECtin family member (clec-26) [Caenorhabditis elegans] 1.0E-137
blast CAB04422 Hypothetical protein Y102A5B.1 [Caenorhabditis elegans] emb|CAA19439.2| Hypothetical protein Y102A5B.1 [Caenorhabditis elegans] ref|NP_507257.2| C-type LECtin family member (clec-27) [Caenorhabditis elegans] 1.0E-116
blast CAB04422 Hypothetical protein Y102A5B.1 [Caenorhabditis elegans] emb|CAA19439.2| Hypothetical protein Y102A5B.1 [Caenorhabditis elegans] ref|NP_507257.2| C-type LECtin family member (clec-27) [Caenorhabditis elegans] 1.0E-111
blast CAB04827 Hypothetical protein T25E12.9 [Caenorhabditis elegans] ref|NP_507235.2| C-type LECtin family member (clec-29) [Caenorhabditis elegans] 1.0E-108
blast CAB04827 Hypothetical protein T25E12.9 [Caenorhabditis elegans] ref|NP_507235.2| C-type LECtin family member (clec-29) [Caenorhabditis elegans] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 3.2E-9
Pfam IPR001304 EMBL-EBI C-type lectin 4.3E-8
Pfam IPR001304 EMBL-EBI C-type lectin 1.2E-5
Pfam IPR001304 EMBL-EBI C-type lectin 3.2E-9
Pfam IPR001304 EMBL-EBI C-type lectin 1.2E-5
Sequence
Target Sequence 
>C. ELEGANS:193226_AT
tgtggaccgggttgatctgtgataacaacgatccgtctttgtgtacgtgggatgtgcaga
gcggaaccaccgcagcttacaataactttgccaagggatatccaagtggcgtaaatgaag
agtgcatttattacatgactactggaacacaagccggacagtgggccagtggattgtgca
atgagactatgagttttgtgtgtgagctgccaacgactatttacgatgaaacatgcaaat
acaactacaacacttattgctacaccccatactctctcggtaaaactgccagcgatgctc
agagctattgtacatcattggggtccaatctggtatcaattcactctggaaacgagaatc
gatacgtcatgacaattaattttggaagaaacaaaaatatattaattggcggagtggctt
tttcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGGACCGGGTTGATCTGTGATAA 291 555 326 Antisense
AACGATCCGTCTTTGTGTACGTGGG 394 143 352 Antisense
GGGATGTGCAGAGCGGAACCACCGC 256 495 374 Antisense
GGAACCACCGCAGCTTACAATAACT 300 529 388 Antisense
CACAAGCCGGACAGTGGGCCAGTGG 324 193 473 Antisense
GTGAGCTGCCAACGACTATTTACGA 409 483 527 Antisense
CCCCATACTCTCTCGGTAAAACTGC 602 261 590 Antisense
AACTGCCAGCGATGCTCAGAGCTAT 661 141 609 Antisense
GAGCTATTGTACATCATTGGGGTCC 90 389 627 Antisense
TGGGGTCCAATCTGGTATCAATTCA 273 553 644 Antisense
TAATTGGCGGAGTGGCTTTTTCAAA 337 631 728 Antisense
Sequence Source Affymetrix Proprietary Database