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[193224_at] Lectin C-type domain short and long forms

Description T20B3.13 /REP_DB=WormBase Gene ID /WP=CE20095 /TR=Q9U363 /GB=CAB63316.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster 6grp_total > 71      4grp_total > 63      6grp_cgc > 76      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 42
(0.1)
A
28.5
(-1.8)
A
61.9
(3)
A
20.4
(-3)
A
42
B 79.1
(3)
P
37.6
(-3)
A
45.8
(-1.8)
A
43.4
(-2.2)
A
42
C 50.1
(-0.2)
A
63.7
(3)
A
38.3
(-3)
A
57.3
(1.5)
A
25
avr 57.1
(3)
43.3
(-2)
48.7
(-0)
40.4
(-3)
17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 102.3
(3)
A
45.8
(-3)
A
58.6
(-1.6)
A
58.8
(-1.6)
A
82
(0.8)
A
60.8
(-1.4)
A
57
B 32.8
(-3)
A
41
(-1.5)
A
47.9
(-0.2)
A
65.4
(3)
P
55.1
(1.1)
A
59.8
(2)
A
33
C 35.3
(-1.8)
A
19.8
(-3)
A
99.7
(3)
A
72.1
(0.9)
M
57.1
(-0.2)
A
24.7
(-2.6)
A
80
avr 56.8
(0.8)
35.5
(-3)
68.7
(3)
65.4
(2.4)
64.7
(2.3)
48.4
(-0.7)
33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 15.3
(2.6)
A
6.2
(-1.5)
A
16.2
(3)
A
3
(-3)
A
13
B 25.2
(3)
P
9.3
(-3)
A
10.6
(-2.5)
A
9.3
(-3)
A
16
C 16.6
(1.8)
A
18.3
(3)
A
13.4
(-0.4)
A
9.7
(-3)
A
9
avr 19
(3)
11.3
(-0.9)
13.4
(0.1)
7.3
(-3)
12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 18.9
(0.1)
A
16.3
(-1.2)
A
12.8
(-3)
A
14.9
(-1.9)
A
24.7
(3)
A
14.8
(-2)
A
12
B 11.4
(-3)
A
13.7
(-1.7)
A
11.6
(-2.9)
A
17.3
(0.2)
P
22.4
(3)
A
22.3
(2.9)
A
11
C 13.1
(-0.8)
A
6
(-3)
A
25.4
(3)
A
14.5
(-0.4)
M
18.5
(0.9)
A
8.3
(-2.3)
A
19
avr 14.5
(-1.5)
12
(-3)
16.6
(-0.2)
15.6
(-0.8)
21.9
(3)
15.1
(-1.1)
10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193224_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14396
Sequence Type Exemplar sequence
Representative Public ID T20B3.13 NCBI
Target Description T20B3.13 /REP_DB=WormBase Gene ID /WP=CE20095 /TR=Q9U363 /GB=CAB63316.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074851(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_074851 NCBI Caenorhabditis elegans C-type LECtin family member (clec-40) (clec-40) mRNA, complete cds. 11/11 None
GENEFINDER00000028356 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16841788:16851034:-1 9/11 None
T20B3.13 ENSEMBL cdna:known chromosome:CEL140:V:16841726:16843588:-1 gene:T20B3.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028351 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16841725-16843588(-) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms
Gene Symbol clec-40
Ensembl T20B3.13
Entrez Gene 188627 Entrez gene
SwissProt Q9U363 EMBL-EBI
WormBase CE35620 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB63316 Hypothetical protein T20B3.13 [Caenorhabditis elegans] ref|NP_507252.2| C-type LECtin family member (clec-40) [Caenorhabditis elegans] 0.0
blast CAB63316 Hypothetical protein T20B3.13 [Caenorhabditis elegans] ref|NP_507252.2| C-type LECtin family member (clec-40) [Caenorhabditis elegans] 1.0E-172
blast CAI94505 Hypothetical protein T20B3.16 [Caenorhabditis elegans] ref|NP_001024150.1| C-type LECtin family member (clec-36) [Caenorhabditis elegans] 1.0E-145
blast CAA19437 Hypothetical protein Y102A5B.3 [Caenorhabditis elegans] ref|NP_507255.2| C-type LECtin family member (clec-37) [Caenorhabditis elegans] 4.0E-81
blast CAI94505 Hypothetical protein T20B3.16 [Caenorhabditis elegans] ref|NP_001024150.1| C-type LECtin family member (clec-36) [Caenorhabditis elegans] 8.0E-51
blast CAB04826 Hypothetical protein T25E12.8 [Caenorhabditis elegans] ref|NP_507234.1| C-type LECtin family member (clec-34) [Caenorhabditis elegans] 5.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 2.6E-15
Pfam IPR001304 EMBL-EBI C-type lectin 6.7E-6
Pfam IPR001304 EMBL-EBI C-type lectin 2.4E-5
Pfam IPR001304 EMBL-EBI C-type lectin 2.6E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507252.2 1 93-115
T20B3.13 1 93-115
GENEFINDER00000028356 3 21-43,353-375,643-665
Sequence
Target Sequence
>C. ELEGANS:193224_AT
gtcacctactatgattttgcacccggattcccaaatgtggacaccggaatatgtgtttct
tataatattacacacaattcaataggtcaatgggaaagcctagtttgttataaacaattg
ccgtttgtttgtgagctgcctacaactacgtcagacaactgcacgaacaactacaagaat
cactgttacatccaggtcgaccaatccgccaccatcccggatgctcagagaatctgccaa
gctcaatgctccaatctcccatctgtacattcagtgaccgagaatctctacctaacttca
atttacaagttctccgacacaagtataattcttggcggaatcgcttctacacctaaatcg
atctggtggtttgatggctctccagttaactttttgaactttaaaacttctcagcgaact
gttgcctcttcttgtattgtacttcatgttggtgatggaggagactgggatactgtagat
tgttccactactgtatccacat


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
GTCACCTACTATGATTTTGCACCCG 502 465 634 Antisense
TTGCACCCGGATTCCCAAATGTGGA 26 699 650 Antisense
ATTGCCGTTTGTTTGTGAGCTGCCT 241 7 750 Antisense
TGAGCTGCCTACAACTACGTCAGAC 674 569 765 Antisense
ATCACTGTTACATCCAGGTCGACCA 565 27 812 Antisense
GAGAATCTGCCAAGCTCAATGCTCC 574 391 861 Antisense
CCAATCTCCCATCTGTACATTCAGT 289 277 884 Antisense
GACCGAGAATCTCTACCTAACTTCA 416 373 909 Antisense
AAACTTCTCAGCGAACTGTTGCCTC 71 127 1037 Antisense
TGTTGCCTCTTCTTGTATTGTACTT 299 563 1053 Antisense
GATTGTTCCACTACTGTATCCACAT 76 435 1111 Antisense
Sequence Source Affymetrix Proprietary Database