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[193218_s_at]

Description T01D3.3B /REP_DB=WormBase Gene ID /WP=CE18163 /TR=P90956 /GB=CAB03260.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Copper-zinc superoxide dismutases (SODC)
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 16      4grp_highest_8_8 > 45      4grp_high_8_8 > 09      6grp_highest_nonorm > 40      6grp_total > 16      4grp_total > 23      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1131
1 2 3 4 range
A 1380
(3)
P 		285.4
(-2.8)
P 		249.1
(-3)
P 		1027
(1.1)
P 		1131
B 1081.5
(2.1)
P 		336
(-2.7)
P 		288
(-3)
P 		1229.1
(3)
P 		941
C 1224.6
(3)
P 		389.5
(-2.4)
P 		299.8
(-3)
P 		980.1
(1.4)
P 		925
avr 1228.7
(3) 		337
(-2.6) 		279
(-3) 		1078.7
(2.1) 		950

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 795
1 2 3 4 5 6 range
A 1111.1
(3)
P 		756.2
(0.2)
P 		438.6
(-2.3)
P 		469.7
(-2.1)
P 		351.2
(-3)
P 		434.2
(-2.3)
P 		760
B 1096.4
(3)
P 		722.7
(0.1)
P 		527.7
(-1.5)
P 		450
(-2.1)
P 		330.2
(-3)
P 		447.1
(-2.1)
P 		766
C 1110.4
(3)
P 		853.8
(1.1)
P 		532.9
(-1.4)
P 		371.1
(-2.6)
P 		315.8
(-3)
P 		418.4
(-2.2)
P 		795
avr 1106
(3) 		777.6
(0.5) 		499.7
(-1.7) 		430.3
(-2.2) 		332.4
(-3) 		433.2
(-2.2) 		774
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 441
1 2 3 4 range
A 502.5
(3)
P 		62
(-3)
P 		65.1
(-3)
P 		150.3
(-1.8)
P 		441
B 344.9
(3)
P 		83
(-2.6)
P 		66.7
(-3)
P 		261.9
(1.2)
P 		278
C 405.4
(3)
P 		112
(-2.9)
P 		104.5
(-3)
P 		165.3
(-1.8)
P 		301
avr 417.6
(3) 		85.7
(-2.9) 		78.8
(-3) 		192.5
(-1) 		339

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 337
1 2 3 4 5 6 range
A 204.8
(0.8)
P 		268.9
(3)
P 		95.5
(-3)
P 		119.1
(-2.2)
P 		106
(-2.6)
P 		105.7
(-2.6)
P 		173
B 381.5
(3)
P 		240.5
(-0.2)
P 		128.1
(-2.8)
P 		119.2
(-3)
P 		134.2
(-2.7)
P 		166.7
(-1.9)
P 		262
C 411.6
(3)
P 		260.5
(0.3)
P 		135.6
(-1.9)
P 		74.6
(-3)
P 		102.2
(-2.5)
P 		140
(-1.8)
P 		337
avr 332.6
(3) 		256.6
(1) 		119.7
(-2.6) 		104.3
(-3) 		114.1
(-2.7) 		137.5
(-2.1) 		228
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193218_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14006
Sequence Type Exemplar sequence
Representative Public ID T01D3.3B NCBI
Target Description T01D3.3B /REP_DB=WormBase Gene ID /WP=CE18163 /TR=P90956 /GB=CAB03260.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Copper-zinc superoxide dismutases (SODC)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073989(11), NM_073988(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073989 NCBI Caenorhabditis elegans T01D3.3a (T01D3.3) mRNA, complete cds. 11/11 None
NM_073988 NCBI Caenorhabditis elegans T01D3.3b (T01D3.3) mRNA, complete cds. 11/11 None
SNAP00000036020 ENSEMBL cdna:SNAP chromosome:CEL140:V:13707685:13713553:1 11/11 None
GENEFINDER00000036031 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13710132:13713553:1 11/11 None
T01D3.3a ENSEMBL cdna:known chromosome:CEL140:V:13708018:13713553:1 gene:T01D3.3 11/11 None
T01D3.3b ENSEMBL cdna:known chromosome:CEL140:V:13708026:13713649:1 gene:T01D3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13708025-13713553(+) 100.0 100.0
Public Domain and Genome References
Ensembl T01D3.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03259 Hypothetical protein T01D3.3a [Caenorhabditis elegans] ref|NP_506390.1| T01D3.3a [Caenorhabditis elegans] 0.0
blast CAB03260 Hypothetical protein T01D3.3b [Caenorhabditis elegans] ref|NP_506389.1| T01D3.3b [Caenorhabditis elegans] 0.0
blast CAE66260 Hypothetical protein CBG11504 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.2E-19
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.5E-8
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.0E-16
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 9.3E-10
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 5.3E-14
Pfam IPR001424 EMBL-EBI Copper/Zinc superoxide dismutase 7.6E-5
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.2E-19
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.5E-8
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.0E-16
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 9.3E-10
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 5.3E-14
Pfam IPR001424 EMBL-EBI Copper/Zinc superoxide dismutase 7.6E-5
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.2E-19
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.5E-8
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.0E-16
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 9.3E-10
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 5.3E-14
Pfam IPR001424 EMBL-EBI Copper/Zinc superoxide dismutase 7.6E-5
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.2E-19
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.5E-8
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.0E-16
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 9.3E-10
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 5.3E-14
Pfam IPR001424 EMBL-EBI Copper/Zinc superoxide dismutase 7.6E-5
Sequence
Target Sequence 
>C. ELEGANS:193218_S_AT
ccatcagttccagtatgctcgggtacatgcagtgccggttgtcattgtgcccctggcttt
gtgagagctcgaaatgatgttactgctccgtgtgttccaagagaaagttgctcatcttca
cttggatcatcgacaacaagccggatgaggatatctcctgttgctgcgagtatggatgaa
cctatgagatttgcaacaattcgagaaataactccacatgatgcgtttgtagatgataca
atagcagtcgcaattttaattacgagagagggagcacatattggccgtttcacattttcc
caactgacaagtacagctcttcgaattcacggagaagtatatactcttccagttggtcgt
catgcagttgttcttcatcaattcggtgattcttctgaaggatgctcacgcgttggcgct
ccattttcgaaatcactcagtccatcgttgggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATCAGTTCCAGTATGCTCGGGTA 38 271 2233 Antisense
ATGCAGTGCCGGTTGTCATTGTGCC 258 43 2259 Antisense
AAATGATGTTACTGCTCCGTGTGTT 667 119 2304 Antisense
CTCATCTTCACTTGGATCATCGACA 297 229 2343 Antisense
GGATATCTCCTGTTGCTGCGAGTAT 464 509 2381 Antisense
CATATTGGCCGTTTCACATTTTCCC 509 213 2509 Antisense
AAGTACAGCTCTTCGAATTCACGGA 624 155 2541 Antisense
ATACTCTTCCAGTTGGTCGTCATGC 128 25 2573 Antisense
GTCGTCATGCAGTTGTTCTTCATCA 307 473 2588 Antisense
TTCTGAAGGATGCTCACGCGTTGGC 710 691 2625 Antisense
AAATCACTCAGTCCATCGTTGGGTG 389 117 2662 Antisense
Sequence Source Affymetrix Proprietary Database