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[193215_at]

Description T20B3.8 /REP_DB=WormBase Gene ID /WP=CE20093 /TR=Q9XUN7 /GB=CAB04739.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster 6grp_total > 18      4grp_total > 44      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 34.5
(3)
A 		14.9
(-0.9)
A 		4.5
(-3)
A 		18.7
(-0.2)
A 		30
B 6.5
(-3)
A 		51.9
(3)
A 		22
(-1)
A 		9.2
(-2.6)
A 		45
C 22.3
(3)
A 		6
(-1.7)
A 		1.3
(-3)
A 		5.3
(-1.9)
A 		21
avr 21.1
(1.7) 		24.3
(3) 		9.3
(-3) 		11.1
(-2.3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 73.3
(3)
A 		17.4
(-2)
A 		24.4
(-1.4)
A 		7.6
(-2.9)
A 		20.7
(-1.7)
A 		6.7
(-3)
A 		67
B 1.8
(-2.9)
A 		1.6
(-3)
A 		4.5
(-2.2)
A 		24.7
(3)
A 		3.1
(-2.6)
A 		21.1
(2.1)
A 		23
C 30.1
(3)
A 		9.4
(-1.3)
A 		6.4
(-1.9)
A 		7.4
(-1.7)
A 		0.9
(-3)
A 		4.3
(-2.3)
A 		29
avr 35.1
(3) 		9.5
(-2.7) 		11.8
(-2.2) 		13.2
(-1.9) 		8.2
(-3) 		10.7
(-2.4) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 12.6
(3)
A 		3.2
(-1.9)
A 		1.2
(-3)
A 		2.7
(-2.2)
A 		11
B 2.1
(-2.9)
A 		12.8
(3)
A 		5.1
(-1.3)
A 		2
(-3)
A 		11
C 7.4
(3)
A 		1.7
(-1.9)
A 		0.4
(-3)
A 		0.9
(-2.6)
A 		7
avr 7.4
(3) 		5.9
(1.4) 		2.2
(-2.7) 		1.9
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 13.5
(3)
A 		6.2
(-0.7)
A 		5.3
(-1.1)
A 		1.9
(-2.8)
A 		6.2
(-0.7)
A 		1.6
(-3)
A 		12
B 0.6
(-2.9)
A 		0.5
(-3)
A 		1.1
(-2.5)
A 		6.5
(1.9)
A 		1.3
(-2.4)
A 		7.9
(3)
A 		7
C 11.2
(3)
A 		2.9
(-1.6)
A 		1.6
(-2.3)
A 		1.5
(-2.3)
A 		0.3
(-3)
A 		1.4
(-2.4)
A 		11
avr 8.4
(3) 		3.2
(-2.4) 		2.7
(-2.9) 		3.3
(-2.3) 		2.6
(-3) 		3.6
(-2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193215_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14506
Sequence Type Exemplar sequence
Representative Public ID T20B3.8 NCBI
Target Description T20B3.8 /REP_DB=WormBase Gene ID /WP=CE20093 /TR=Q9XUN7 /GB=CAB04739.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T20B3.8 ENSEMBL cdna:known chromosome:CEL140:V:16844040:16845444:1 gene:T20B3.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028352 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16844039-16845444(+) 100.0 100.0
Public Domain and Genome References
Ensembl T20B3.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T25019 hypothetical protein T20B3.8 - Caenorhabditis elegans 0.0
blast CAB04740 Hypothetical protein T20B3.12 [Caenorhabditis elegans] ref|NP_507254.2| C-type LECtin family member (clec-26) [Caenorhabditis elegans] 1.0E-100
blast CAB04422 Hypothetical protein Y102A5B.1 [Caenorhabditis elegans] emb|CAA19439.2| Hypothetical protein Y102A5B.1 [Caenorhabditis elegans] ref|NP_507257.2| C-type LECtin family member (clec-27) [Caenorhabditis elegans] 2.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 8.5E-10
Pfam IPR001304 EMBL-EBI C-type lectin 2.9E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
T20B3.8 1 37-54
Sequence
Target Sequence 
>C. ELEGANS:193215_AT
ccgggctggtctgtcgtagatatgaaccgaaatggtgtacttgggatgtcaaaagcggaa
ccaccgccgactacgacaactttgccgaaggttcttcaaataatgaatatggagactgta
tttattatataactactggaacacaagccggcaaatgggcaagtgcatcatgcaatcagg
cgttgagttttgtgtgtgagctacctgcaactatttatgatagaacatgcgaatacaact
acaacaatcattgctacatcccaaatttggaatggaagctctctagcgaggcgcaaagct
attgcacatcattggattctaatttggcttcaattcagtctgcaaatgaaaatcgcttcg
caatgagcttattttccccgagaacagcaattgcaattggtggagttgccgtttcagaca
actttgttctatggtatgatggaacaaaaacgacttttatcaatataatcgagtttagaa
gagggagttgtcttttcattagaggtgattacggaggacactggataggttacgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGGGCTGGTCTGTCGTAGATATGA 47 265 398 Antisense
GACAACTTTGCCGAAGGTTCTTCAA 617 363 472 Antisense
AGTGCATCATGCAATCAGGCGTTGA 682 57 559 Antisense
GTGAGCTACCTGCAACTATTTATGA 420 483 593 Antisense
TACAACAATCATTGCTACATCCCAA 231 643 637 Antisense
AATGGAAGCTCTCTAGCGAGGCGCA 300 161 668 Antisense
GCGAGGCGCAAAGCTATTGCACATC 29 291 683 Antisense
AAATCGCTTCGCAATGAGCTTATTT 156 119 747 Antisense
GAGCTTATTTTCCCCGAGAACAGCA 483 387 762 Antisense
ATTGGTGGAGTTGCCGTTTCAGACA 313 3 793 Antisense
GGAGGACACTGGATAGGTTACGATT 439 513 910 Antisense
Sequence Source Affymetrix Proprietary Database