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[193212_s_at] mitochondrial phosphate carrier protei /// mitochondrial phosphate carrier protein

Description C33F10.12 /REP_DB=WormBase Gene ID /WP=CE04144 /TR=Q18390 /GB=AAK31480.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=mitochondrial phosphate carrier protei
Cluster 6grp_total > 78      4grp_total > 04      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 48.2
(-3)
A 		74.4
(0.7)
A 		53.2
(-2.3)
A 		90.3
(3)
A 		42
B 41.9
(-0.4)
A 		7.7
(-3)
A 		29.4
(-1.4)
A 		87.9
(3)
P 		80
C 66.4
(0.8)
A 		37.3
(-3)
A 		40.5
(-2.6)
A 		83.1
(3)
P 		46
avr 52.2
(-1.4) 		39.8
(-3) 		41
(-2.8) 		87.1
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 364
1 2 3 4 5 6 range
A 58.7
(-3)
A 		57.8
(-3)
A 		71
(-2.8)
P 		58.4
(-3)
M 		153.2
(-1.3)
P 		400.4
(3)
P 		343
B 54.5
(-2.6)
A 		75.8
(-2)
A 		36.9
(-3)
A 		39.4
(-2.9)
A 		160.7
(0)
P 		280.7
(3)
P 		244
C 46.1
(-3)
A 		68.2
(-2.4)
M 		54.9
(-2.8)
A 		86.9
(-1.9)
A 		160.2
(0.1)
P 		269.6
(3)
P 		224
avr 53.1
(-3) 		67.3
(-2.7) 		54.3
(-3) 		61.6
(-2.8) 		158
(-0.6) 		316.9
(3) 		264
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 17.6
(3)
A 		16.1
(1)
A 		13.9
(-2)
A 		13.2
(-3)
A 		4
B 13.4
(1.1)
A 		1.9
(-3)
A 		6.8
(-1.3)
A 		18.7
(3)
P 		17
C 22
(3)
A 		10.7
(-3)
A 		14.1
(-1.2)
A 		14
(-1.2)
P 		11
avr 17.7
(3) 		9.6
(-3) 		11.6
(-1.5) 		15.3
(1.2) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 10.8
(-3)
A 		20.5
(-2.3)
A 		15.5
(-2.7)
P 		14.8
(-2.7)
M 		46.2
(-0.6)
P 		97.5
(3)
P 		87
B 19
(-2.4)
A 		25.2
(-2)
A 		8.9
(-3)
A 		10.4
(-2.9)
A 		65.3
(0.5)
P 		104.7
(3)
P 		96
C 17.1
(-2.8)
A 		20.8
(-2.5)
M 		14
(-3)
A 		17.5
(-2.7)
A 		51.8
(-0)
P 		90.2
(3)
P 		76
avr 15.6
(-2.8) 		22.2
(-2.3) 		12.8
(-3) 		14.2
(-2.9) 		54.4
(-0.1) 		97.5
(3) 		85
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193212_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5100
Sequence Type Exemplar sequence
Representative Public ID C33F10.12 NCBI
Target Description C33F10.12 /REP_DB=WormBase Gene ID /WP=CE04144 /TR=Q18390 /GB=AAK31480.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=mitochondrial phosphate carrier protei
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062469(11), NM_060160(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062469 NCBI Caenorhabditis elegans C33F10.12 (C33F10.12) mRNA, complete cds. 11/11 None
NM_060160 NCBI Caenorhabditis elegans T05F1.8 (T05F1.8) mRNA, complete cds. 11/11 None
SNAP00000020946 ENSEMBL cdna:SNAP chromosome:CEL140:I:9650613:9651886:1 11/11 None
GENEFINDER00000020957 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9650613:9652526:1 11/11 None
SNAP00000016475 ENSEMBL cdna:SNAP chromosome:CEL140:II:4836353:4837624:-1 11/11 None
GENEFINDER00000016486 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4836353:4837628:-1 11/11 None
T05F1.8 ENSEMBL cdna:known chromosome:CEL140:I:9650492:9651915:1 gene:T05F1.8 11/11 None
C33F10.12 ENSEMBL cdna:known chromosome:CEL140:II:4836353:4837624:-1 gene:C33F10.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9650543-9651817(+) 91.86 96.18
chrII:4836351-4837623(-) 95.59 100.0
Public Domain and Genome References
Gene Title mitochondrial phosphate carrier protei
mitochondrial phosphate carrier protein
Ensembl T05F1.8
C33F10.12
Entrez Gene 172809 Entrez gene
183168 Entrez gene
SwissProt Q18390 EMBL-EBI
Q9XUR1 EMBL-EBI
WormBase CE04144 Wormbase
CE13249 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250206_AT mitochondrial phosphate transporter at
CANINE_2:CFA.715.1.S1_AT solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 cfa
CANINE_2:CFA.715.1.S1_S_AT solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 cfa
DROSOPHILA_2:1633272_AT dm
DROSGENOME1:142583_AT dm
CHICKEN:GGA.4747.1.S1_AT solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 gga
CHICKEN:GGAAFFX.11697.1.S1_S_AT solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 gga
HG-U95AV2:37675_AT solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 hs
PLASMODIUM_ANOPHELES:200030_S_AT solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 hs
HG-U133_PLUS_2:200030_S_AT solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 hs
HG-FOCUS:200030_S_AT solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 hs
HG-U133A:200030_S_AT solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 hs
HG-U133B:200030_S_AT solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 hs
HG-U133A_2:200030_S_AT solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 hs
U133_X3P:200030_S_AT solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 hs
HUGENEFL:X60036_AT solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 hs
U133_X3P:G4505774_3P_S_AT solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 hs
HG-U95D:89865_AT solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 hs
MOUSE430_2:1416300_A_AT solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3 mm
MOE430A:1416300_A_AT solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3 mm
MOUSE430A_2:1416300_A_AT solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3 mm
MG-U74CV2:136620_R_AT solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3 mm
MG-U74BV2:164443_AT solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3 mm
MOE430B:1440302_AT solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3 mm
MOUSE430_2:1440302_AT solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3 mm
MU19KSUBA:TC18558_AT Solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3 (Slc25a3), mRNA mm
MU19KSUBB:TC33169_F_AT Solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3 (Slc25a3), mRNA mm
RAE230A:1370277_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 3 rn
RAT230_2:1370277_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 3 rn
RG-U34A:RC_AA892776_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 3 rn
YEAST_2:1769679_AT Mitochondrial phosphate carrier, imports inorganic phosphate into mitochondria; functionally redundant with Mir1p but less abundant than Mir1p under normal conditions; expression is induced at high temperature Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5488 binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494870 C33F10.12 [Caenorhabditis elegans] gb|AAK31480.1| Hypothetical protein C33F10.12 [Caenorhabditis elegans] 0.0
blast CAB04697 Hypothetical protein T05F1.8 [Caenorhabditis elegans] ref|NP_492561.2| T05F1.8 [Caenorhabditis elegans] 0.0
blast CAE60193 Hypothetical protein CBG03753 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.3E-28
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 2.0E-27
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 5.9E-10
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.3E-28
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 2.0E-27
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 5.9E-10
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 2.5E-28
Sequence
Target Sequence 
>C. ELEGANS:193212_S_AT
tcgtgcatgtgctccaatgatttacaagcaggaagggctcactggattcttcaagggact
tccacctctttggactcgccaaattccatacaccatgatgaagttcacttgcttcgagaa
aactgtcgagcttctctatcagtacgttgttccgaaaccacgtgctcaatgctcaaagtc
ggaacaattggcagttactttcacagctggatacattgctggtgttttctgtgcagtcgt
gtcccatcctccagatgttcttgtttcaaaactgaatcaagattcaaatgctagtgttgg
aagtcttgtcaaacaacttggattcaagggactttggggaggacttggcccaagaatcat
tatggttggaactttgactgctcttcaatggttcatctatgattcgttcaaggttgcaat
gaatcttccacgtccaccaccaccacgaatgccagaatctttgaagaagaagctcggaat
tccgggaaccactgaagttgctccagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTGCATGTGCTCCAATGATTTAC 595 601 564 Antisense
AGCAGGAAGGGCTCACTGGATTCTT 46 71 590 Antisense
GGCTCACTGGATTCTTCAAGGGACT 295 539 599 Antisense
GAGCTTCTCTATCAGTACGTTGTTC 370 389 691 Antisense
GTTACTTTCACAGCTGGATACATTG 612 445 757 Antisense
GATACATTGCTGGTGTTTTCTGTGC 570 423 773 Antisense
GATTCAAGGGACTTTGGGGAGGACT 187 431 884 Antisense
TATGGTTGGAACTTTGACTGCTCTT 661 653 924 Antisense
AACTTTGACTGCTCTTCAATGGTTC 187 139 933 Antisense
GTTCATCTATGATTCGTTCAAGGTT 612 443 954 Antisense
CGGGAACCACTGAAGTTGCTCCAGT 184 243 1046 Antisense
Sequence Source Affymetrix Proprietary Database