[Home] | [Total List]

[193206_at] chromatin organization modifier domain

Description Y57G11C.19 /REP_DB=WormBase Gene ID /WP=CE14962 /TR=O18243 /GB=CAB16520.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=chromatin organization modifier domain
Cluster 6grp_total > 92      4grp_total > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 2.2
(-3)
A 		5.5
(-2)
A 		3.6
(-2.6)
A 		22.5
(3)
A 		20
B 1.2
(-3)
A 		1.7
(-0)
A 		2.2
(3)
A 		2.2
(3)
A 		1
C 11.3
(-1.3)
A 		2.1
(-3)
A 		3.3
(-2.8)
A 		34.9
(3)
A 		33
avr 4.9
(-2.3) 		3.1
(-3) 		3
(-3) 		19.9
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3.7
(-0.7)
A 		3.9
(-0.4)
A 		2.8
(-2.2)
A 		6
(3)
A 		2.3
(-3)
A 		2.5
(-2.7)
A 		4
B 3.1
(3)
A 		1.6
(-1.5)
A 		1.3
(-2.4)
A 		1.4
(-2.1)
A 		2.2
(0.3)
A 		1.1
(-3)
A 		2
C 3.5
(-1.8)
A 		8.8
(1.2)
A 		1.6
(-2.8)
A 		3.4
(-1.8)
A 		12.1
(3)
A 		1.3
(-3)
A 		11
avr 3.4
(-0.2) 		4.8
(1.9) 		1.9
(-2.5) 		3.6
(0.1) 		5.5
(3) 		1.6
(-3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.8
(-3)
A 		1.2
(-2)
A 		0.9
(-2.8)
A 		3.3
(3)
A 		3
B 0.4
(-3)
A 		0.4
(-3)
A 		0.5
(3)
A 		0.5
(3)
A 		0
C 3.7
(0.5)
A 		0.6
(-3)
A 		1.1
(-2.4)
A 		5.9
(3)
A 		5
avr 1.6
(-0.8) 		0.7
(-3) 		0.8
(-2.8) 		3.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.7
(-2.3)
A 		1.4
(2.3)
A 		0.6
(-3)
A 		1.5
(3)
A 		0.7
(-2.3)
A 		0.6
(-3)
A 		1
B 1.1
(3)
A 		0.5
(-1.5)
A 		0.3
(-3)
A 		0.4
(-2.3)
A 		0.9
(1.5)
A 		0.4
(-2.3)
A 		1
C 1.3
(-1.5)
A 		2.7
(0.9)
A 		0.4
(-3)
A 		0.7
(-2.5)
A 		3.9
(3)
A 		0.4
(-3)
A 		4
avr 1
(-0.4) 		1.5
(1.7) 		0.4
(-3) 		0.9
(-0.9) 		1.8
(3) 		0.5
(-2.6) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193206_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9118
Sequence Type Exemplar sequence
Representative Public ID Y57G11C.19 NCBI
Target Description Y57G11C.19 /REP_DB=WormBase Gene ID /WP=CE14962 /TR=O18243 /GB=CAB16520.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=chromatin organization modifier domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070396(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070396 NCBI Caenorhabditis elegans Y57G11C.19 (Y57G11C.19) mRNA, complete cds. 11/11 A 
SNAP00000003491 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14839181:14840233:-1 11/11 None
GENEFINDER00000003616 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14839181:14842574:-1 11/11 None
Y57G11C.19 ENSEMBL cdna:known chromosome:CEL140:IV:14839181:14840233:-1 gene:Y57G11C.19 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022457 6/11 Cross Hyb Matching Probes None
GENEFINDER00000022469 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7960426-7961479(-) 98.1 98.29
chrIV:14839186-14840239(-) 99.81 100.0
Public Domain and Genome References
Gene Title chromatin organization modifier domain
Ensembl Y57G11C.19
Entrez Gene 190376 Entrez gene
SwissProt O18243 EMBL-EBI
WormBase CE14962 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6310 DNA recombination inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB16520 Hypothetical protein Y57G11C.19 [Caenorhabditis elegans] ref|NP_502797.1| Y57G11C.19 [Caenorhabditis elegans] 0.0
blast CAB16519 Hypothetical protein Y57G11C.18 [Caenorhabditis elegans] ref|NP_502798.1| Y57G11C.18 [Caenorhabditis elegans] 1.0E-159
blast AAA28053 Hypothetical protein F54H12.4 [Caenorhabditis elegans] ref|NP_498734.1| F54H12.4 [Caenorhabditis elegans] sp|P34458|YMD4_CAEEL Hypothetical protein F54H12.4 in chromosome III 1.0E-151
blast AAA28054 Hypothetical protein F54H12.3 [Caenorhabditis elegans] ref|NP_498733.1| F54H12.3 [Caenorhabditis elegans] sp|P34457|YMD3_CAEEL Hypothetical protein F54H12.3 in chromosome III 1.0E-101
blast AAA93301 HASI 7.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 4.2E-22
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 4.2E-22
Sequence
Target Sequence 
>C. ELEGANS:193206_AT
gaagtttatgtaatttccaaagtgtttgcaaggaaaccagttacctacaatatagtagac
actaatggagaaaaaattgccggaatattctacactcgagaactgactaaatgcacatat
aaaccagacgctcagtatcgaattgaaaagattttagccactcgtacagtacgcggaaag
aaacagcacctcgttcgttgggacggatatggtgccgaatttgactcttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTTTATGTAATTTCCAAAGTGT 42 337 805 Antisense
GGAAACCAGTTACCTACAATATAGT 275 527 836 Antisense
ATTGCCGGAATATTCTACACTCGAG 400 7 880 Antisense
ACACTCGAGAACTGACTAAATGCAC 641 109 896 Antisense
TGCACATATAAACCAGACGCTCAGT 512 575 916 Antisense
AACCAGACGCTCAGTATCGAATTGA 245 147 926 Antisense
GAAAAGATTTTAGCCACTCGTACAG 245 353 949 Antisense
TTAGCCACTCGTACAGTACGCGGAA 453 681 958 Antisense
GTACGCGGAAAGAAACAGCACCTCG 670 451 973 Antisense
CACCTCGTTCGTTGGGACGGATATG 399 199 991 Antisense
GATATGGTGCCGAATTTGACTCTTG 244 425 1010 Antisense
Sequence Source Affymetrix Proprietary Database