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[193203_s_at]

Description Y47D9A.1A /REP_DB=WormBase Gene ID /WP=CE22073 /TR=Q9N4V3 /GB=AAF60647.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=mannose-1-phosphate gaunyl transferase
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 72      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 55      6grp_total > 73      4grp_total > 57      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 984
1 2 3 4 range
A 813.7
(-2)
P 		1388.2
(1.8)
P 		1578.6
(3)
P 		660.7
(-3)
P 		918
B 856.7
(-1.1)
P 		1309.7
(2.1)
P 		1438.1
(3)
P 		595
(-3)
P 		843
C 725.2
(-1.8)
P 		1196.8
(3)
P 		1146.3
(2.5)
P 		609.4
(-3)
P 		587
avr 798.5
(-1.6) 		1298.2
(2.3) 		1387.7
(3) 		621.7
(-3) 		766

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1120
1 2 3 4 5 6 range
A 1105.2
(-3)
P 		1360.5
(-0.7)
P 		1677.6
(2.3)
P 		1757.3
(3)
P 		1587.7
(1.4)
P 		1326.5
(-1)
P 		652
B 823.7
(-3)
P 		1148.9
(-1.2)
P 		1121.4
(-1.3)
P 		1880.5
(3)
P 		1544.8
(1.1)
P 		1275.2
(-0.4)
P 		1057
C 821.1
(-3)
P 		1229
(-0.8)
P 		1916
(2.9)
P 		1941.2
(3)
P 		1355.2
(-0.1)
P 		1438.8
(0.3)
P 		1120
avr 916.7
(-3) 		1246.1
(-0.9) 		1571.7
(1.2) 		1859.7
(3) 		1495.9
(0.7) 		1346.8
(-0.3) 		943
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 316
1 2 3 4 range
A 296.3
(0.8)
P 		301.3
(0.9)
P 		412.7
(3)
P 		96.7
(-3)
P 		316
B 273.2
(1.3)
P 		323.5
(2.7)
P 		333.3
(3)
P 		126.8
(-3)
P 		207
C 240.1
(-0.2)
P 		344.1
(1.9)
P 		399.5
(3)
P 		102.8
(-3)
P 		297
avr 269.9
(0.5) 		323
(1.7) 		381.8
(3) 		108.8
(-3) 		273

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 424
1 2 3 4 5 6 range
A 203.7
(-3)
P 		483.9
(3)
P 		365.3
(0.5)
P 		445.7
(2.2)
P 		479.1
(2.9)
P 		323
(-0.4)
P 		280
B 286.6
(-2.8)
P 		382.4
(-1.1)
P 		272.3
(-3)
P 		498.1
(0.8)
P 		627.6
(3)
P 		475.5
(0.4)
P 		355
C 304.4
(-3)
P 		375
(-0.7)
P 		487.7
(3)
P 		390.4
(-0.2)
P 		438.5
(1.4)
P 		481.6
(2.8)
P 		183
avr 264.9
(-3) 		413.8
(0.6) 		375.1
(-0.4) 		444.7
(1.3) 		515.1
(3) 		426.7
(0.9) 		250
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193203_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1510
Sequence Type Exemplar sequence
Representative Public ID Y47D9A.1A NCBI
Target Description Y47D9A.1A /REP_DB=WormBase Gene ID /WP=CE22073 /TR=Q9N4V3 /GB=AAF60647.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=mannose-1-phosphate gaunyl transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058948(11), NM_058949(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058948 NCBI Caenorhabditis elegans Y47D9A.1a (Y47D9A.1) mRNA, complete cds. 11/11 None
NM_058949 NCBI Caenorhabditis elegans Y47D9A.1b (Y47D9A.1) mRNA, complete cds. 11/11 None
GENEFINDER00000009719 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4303873:4307967:1 11/11 None
SNAP00000009718 ENSEMBL cdna:SNAP chromosome:CEL140:I:4304332:4307967:1 11/11 None
Y47D9A.1a.2 ENSEMBL cdna:known chromosome:CEL140:I:4303929:4307967:1 gene:Y47D9A.1 11/11 None
Y47D9A.1a.1 ENSEMBL cdna:known chromosome:CEL140:I:4303931:4308245:1 gene:Y47D9A.1 11/11 None
Y47D9A.1b ENSEMBL cdna:known chromosome:CEL140:I:4304068:4307967:1 gene:Y47D9A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4304004-4307967(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y47D9A.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60647 Hypothetical protein Y47D9A.1a [Caenorhabditis elegans] ref|NP_491349.1| Y47D9A.1a [Caenorhabditis elegans] 0.0
blast CAE66821 Hypothetical protein CBG12186 [Caenorhabditis briggsae] 0.0
blast AAF60648 Hypothetical protein Y47D9A.1b [Caenorhabditis elegans] ref|NP_491350.1| Y47D9A.1b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001451 EMBL-EBI Bacterial transferase hexapeptide repeat 0.66
Pfam IPR001451 EMBL-EBI Bacterial transferase hexapeptide repeat 0.0052
Pfam IPR001451 EMBL-EBI Bacterial transferase hexapeptide repeat 1.3
Pfam IPR005835 EMBL-EBI Nucleotidyl transferase 8.0E-15
Pfam IPR001451 EMBL-EBI Bacterial transferase hexapeptide repeat 0.66
Pfam IPR001451 EMBL-EBI Bacterial transferase hexapeptide repeat 0.0052
Pfam IPR001451 EMBL-EBI Bacterial transferase hexapeptide repeat 1.3
Pfam IPR005835 EMBL-EBI Nucleotidyl transferase 8.7E-9
Pfam IPR001451 EMBL-EBI Bacterial transferase hexapeptide repeat 0.66
Pfam IPR001451 EMBL-EBI Bacterial transferase hexapeptide repeat 0.0052
Pfam IPR001451 EMBL-EBI Bacterial transferase hexapeptide repeat 1.3
Pfam IPR005835 EMBL-EBI Nucleotidyl transferase 8.0E-15
Sequence
Target Sequence 
>C. ELEGANS:193203_S_AT
tcgatcttccactgaacggcgatggaatctggttggaaactgacgttcttccacaactcg
cttcttcgggaaatctatatgctcttcacacaactagatggtggagtcagacaaaaactg
cggctgcagttctctacgccaaccgtcactaccttcgcctctacaaaagacgttatgcag
ctagattgtgtaagaatggagctcagatcatcggagacgtcttcatcgatccaagtgcaa
aagttcatccaaccgcaaaaattggtccaaatgtgagcatcgggccaaaaagtgtaattg
gaaaaggagttcgtatcaaggaatcgattattttgccggaagcagtaatcgaggaaaatg
cgtgtgtccttcaatcagttatcggatggcgttcggtcgttggaatgtgggctagaattg
aaggaattccacttgaaccgaatccaaatcttccatttgctaagatggacaacaagccac
tattccttccggatggtcgtttgaccccatcactaacaattctcggatctgacgtctccg
ttgctcctgaaactatcatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGATCTTCCACTGAACGGCGATGG 4 603 593 Antisense
TTCCACAACTCGCTTCTTCGGGAAA 301 699 641 Antisense
CTACCTTCGCCTCTACAAAAGACGT 416 215 741 Antisense
GAGCTCAGATCATCGGAGACGTCTT 353 387 791 Antisense
AATGCGTGTGTCCTTCAATCAGTTA 149 167 949 Antisense
AGTTATCGGATGGCGTTCGGTCGTT 511 61 969 Antisense
TGGACAACAAGCCACTATTCCTTCC 659 547 1058 Antisense
TATTCCTTCCGGATGGTCGTTTGAC 154 663 1073 Antisense
GTTTGACCCCATCACTAACAATTCT 383 447 1091 Antisense
AATTCTCGGATCTGACGTCTCCGTT 2 177 1110 Antisense
TCCGTTGCTCCTGAAACTATCATCC 507 593 1129 Antisense
Sequence Source Affymetrix Proprietary Database