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[193202_at] 7TM chemoreceptor (srd-family)

Description ZK863.5 /REP_DB=WormBase Gene ID /WP=CE15443 /GEN=srd-4 /TR=Q23648 /GB=CAB01451.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM chemoreceptor (srd-family)
Cluster 6grp_total > 37      4grp_total > 10      6grp_cgc > 15      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 5
(-3)
A 		16.8
(-1.8)
A 		4.9
(-3)
A 		65.2
(3)
A 		60
B 17.9
(-2.4)
A 		10
(-3)
A 		21.4
(-2.1)
A 		84
(3)
P 		74
C 6.4
(-3)
A 		21.5
(-2.1)
A 		6
(-3)
A 		113.4
(3)
P 		107
avr 9.8
(-3) 		16.1
(-2.5) 		10.8
(-2.9) 		87.5
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 27.3
(3)
A 		4.4
(-3)
A 		4.8
(-2.9)
A 		6.3
(-2.5)
A 		8.8
(-1.8)
A 		26
(2.7)
A 		23
B 15.8
(0.6)
A 		22.2
(2.5)
A 		8.9
(-1.4)
A 		24
(3)
A 		3.5
(-3)
A 		6
(-2.3)
A 		21
C 8.9
(-0.5)
A 		18.8
(3)
A 		1.7
(-3)
A 		2.3
(-2.8)
A 		2.6
(-2.7)
A 		5
(-1.8)
A 		17
avr 17.3
(3) 		15.1
(1.9) 		5.1
(-3) 		10.9
(-0.1) 		5
(-3) 		12.3
(0.6) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 1.8
(-2.6)
A 		3.7
(-1.2)
A 		1.3
(-3)
A 		9.5
(3)
A 		8
B 5.7
(-1.8)
A 		2.5
(-3)
A 		5
(-2)
A 		17.9
(3)
P 		15
C 2.1
(-3)
A 		6.2
(-1.6)
A 		2.1
(-3)
A 		19.1
(3)
P 		17
avr 3.2
(-2.8) 		4.1
(-2.4) 		2.8
(-3) 		15.5
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 5
(1.5)
A 		1.6
(-2.3)
A 		1
(-3)
A 		1.6
(-2.3)
A 		2.7
(-1.1)
A 		6.3
(3)
A 		5
B 5.5
(1.1)
A 		7.4
(3)
A 		2.2
(-2.2)
A 		6.3
(1.9)
A 		1.4
(-3)
A 		2.2
(-2.2)
A 		6
C 3.3
(0.3)
A 		5.7
(3)
A 		0.4
(-3)
A 		0.5
(-2.9)
A 		0.9
(-2.4)
A 		1.7
(-1.5)
A 		5
avr 4.6
(2.5) 		4.9
(3) 		1.2
(-3) 		2.8
(-0.4) 		1.7
(-2.2) 		3.4
(0.6) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193202_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13675
Sequence Type Exemplar sequence
Representative Public ID ZK863.5 NCBI
Target Description ZK863.5 /REP_DB=WormBase Gene ID /WP=CE15443 /GEN=srd-4 /TR=Q23648 /GB=CAB01451.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM chemoreceptor (srd-family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073656(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073656 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-4) (srd-4) mRNA, complete cds. 11/11 None
SNAP00000039743 ENSEMBL cdna:SNAP chromosome:CEL140:V:12187568:12188833:1 11/11 None
GENEFINDER00000039746 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12186825:12188833:1 11/11 None
ZK863.5 ENSEMBL cdna:known chromosome:CEL140:V:12187537:12188833:1 gene:ZK863.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12187536-12188833(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor (srd-family)
Gene Symbol srd-4
Ensembl ZK863.5
Entrez Gene 191796 Entrez gene
SwissProt Q23648 EMBL-EBI
WormBase CE15443 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01451 Hypothetical protein ZK863.5 [Caenorhabditis elegans] ref|NP_506057.1| Serpentine Receptor, class D (delta) family member (srd-4) [Caenorhabditis elegans] 0.0
blast CAB01451 Hypothetical protein ZK863.5 [Caenorhabditis elegans] ref|NP_506057.1| Serpentine Receptor, class D (delta) family member (srd-4) [Caenorhabditis elegans] 1.0E-180
blast CAB01451 Hypothetical protein ZK863.5 [Caenorhabditis elegans] ref|NP_506057.1| Serpentine Receptor, class D (delta) family member (srd-4) [Caenorhabditis elegans] 1.0E-161
blast CAE75411 Hypothetical protein CBG23401 [Caenorhabditis briggsae] 1.0E-151
blast CAE75411 Hypothetical protein CBG23401 [Caenorhabditis briggsae] 1.0E-139
blast CAE75411 Hypothetical protein CBG23401 [Caenorhabditis briggsae] 1.0E-124
blast AAK72081 Serpentine receptor, class d (delta) protein 12 [Caenorhabditis elegans] ref|NP_500836.1| Serpentine Receptor, class D (delta) family member (srd-12) [Caenorhabditis elegans] 3.0E-52
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506057.1 6 7-29,95-117,126-146,182-204,228-250,265-285
ZK863.5 6 7-29,95-117,126-146,182-204,228-250,265-285
SNAP00000039743 5 40-62,71-91,127-149,173-195,210-230
GENEFINDER00000039746 5 100-122,131-151,187-209,233-255,270-290
Sequence
Target Sequence 
>C. ELEGANS:193202_AT
gctgatcttcgagaatttccgtgtttgttttcatatcttctaatgcttattccaattatc
cctggatatttgattatgtatgggctccgccgaaaaatacacttcaagttacgaaatgca
attctccgtccggaaattcgagaaaaacatagacagctgacttgggcactgacagttcag
actattgttccaattgcttttatattctcatcaatttgtttcctacttggtcagctgagg
atcgttgaatctccagttcttgaaagtttcacacttctttttgccgttttggttcccgtt
atcaatccattgattaccgttacttttatcaaaccgtatcgagaatctgtcatgagagca
gttggaattgatcctaaaattttgattttcatgtcacgagaatgttctgttgcacctggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGATCTTCGAGAATTTCCGTGTT 388 295 538 Antisense
TTCCGTGTTTGTTTTCATATCTTCT 552 699 554 Antisense
TTGATTATGTATGGGCTCCGCCGAA 197 707 607 Antisense
ACGAAATGCAATTCTCCGTCCGGAA 246 91 648 Antisense
GACAGCTGACTTGGGCACTGACAGT 630 367 689 Antisense
ATTTGTTTCCTACTTGGTCAGCTGA 455 17 751 Antisense
GAGGATCGTTGAATCTCCAGTTCTT 578 403 774 Antisense
GAAAGTTTCACACTTCTTTTTGCCG 592 355 799 Antisense
GTTTTGGTTCCCGTTATCAATCCAT 489 447 823 Antisense
CAATCCATTGATTACCGTTACTTTT 128 181 840 Antisense
ACGAGAATGTTCTGTTGCACCTGGT 300 93 933 Antisense
Sequence Source Affymetrix Proprietary Database