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[193201_s_at]

Description F30A10.8B /REP_DB=WormBase Gene ID /WP=CE20737 /TR=Q9XVP8 /GB=CAB03028.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=PDZ domain (Also known as DHR or GLGF).
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 23      4grp_high_8_8 > 42      6grp_highest_nonorm > 51      6grp_total > 12      4grp_total > 53      6grp_highest_sub > 02      6grp_cgc > 62      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 454
1 2 3 4 range
A 583.4
(3)
P 		504.2
(1.7)
P 		384.7
(-0.2)
P 		212.9
(-3)
P 		371
B 666.7
(3)
P 		453.4
(-0.1)
P 		374.1
(-1.2)
P 		251.8
(-3)
P 		415
C 585.6
(3)
P 		397.9
(-0.2)
P 		375.8
(-0.6)
P 		238.2
(-3)
A 		347
avr 611.9
(3) 		451.8
(0.5) 		378.2
(-0.7) 		234.3
(-3) 		378

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 467
1 2 3 4 5 6 range
A 610.2
(3)
P 		597.3
(2.8)
P 		524.7
(1.4)
P 		548.7
(1.8)
P 		317.7
(-2.5)
P 		291.1
(-3)
P 		319
B 647.3
(2)
P 		716.5
(3)
P 		599.2
(1.3)
P 		508.5
(-0)
P 		459.2
(-0.7)
P 		303.8
(-3)
P 		413
C 479.1
(-1)
P 		758
(3)
P 		493.3
(-0.8)
P 		487.7
(-0.8)
P 		334.5
(-3)
P 		338.3
(-2.9)
P 		424
avr 578.9
(1.2) 		690.6
(3) 		539.1
(0.6) 		515
(0.2) 		370.5
(-2.1) 		311.1
(-3) 		380
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 212.4
(3)
P 		109.5
(-0.4)
P 		100.6
(-0.7)
P 		31.2
(-3)
P 		181
B 212.6
(3)
P 		112
(-0.8)
P 		86.7
(-1.8)
P 		53.7
(-3)
P 		159
C 193.8
(3)
P 		114.4
(-0.1)
P 		131
(0.5)
P 		40.2
(-3)
A 		154
avr 206.3
(3) 		112
(-0.4) 		106.1
(-0.7) 		41.7
(-3) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 112.5
(-1.2)
P 		212.4
(3)
P 		114.3
(-1.2)
P 		139.2
(-0.1)
P 		95.9
(-1.9)
P 		70.9
(-3)
P 		142
B 225.2
(2.4)
P 		238.5
(3)
P 		145.5
(-1.5)
P 		134.7
(-2)
P 		186.5
(0.5)
P 		113.3
(-3)
P 		125
C 177.6
(0.6)
P 		231.3
(3)
P 		125.5
(-1.8)
P 		98.1
(-3)
P 		108.2
(-2.5)
P 		113.3
(-2.3)
P 		133
avr 171.8
(0.4) 		227.4
(3) 		128.4
(-1.6) 		124
(-1.8) 		130.2
(-1.5) 		99.2
(-3) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193201_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2064
Sequence Type Exemplar sequence
Representative Public ID F30A10.8B NCBI
Target Description F30A10.8B /REP_DB=WormBase Gene ID /WP=CE20737 /TR=Q9XVP8 /GB=CAB03028.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=PDZ domain (Also known as DHR or GLGF).
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060121(11), NM_060120(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060121 NCBI Caenorhabditis elegans F30A10.8b (beta1-syntrophin) mRNA, complete cds. 11/11 A 
NM_060120 NCBI Caenorhabditis elegans F30A10.8a (beta1-syntrophin) mRNA, complete cds. 11/11 A 
SNAP00000021995 ENSEMBL cdna:SNAP chromosome:CEL140:I:9511002:9512943:1 11/11 None
GENEFINDER00000022001 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9511002:9512684:1 11/11 None
F30A10.8b ENSEMBL cdna:known chromosome:CEL140:I:9509389:9512726:1 gene:F30A10.8 11/11 A 
F30A10.8a ENSEMBL cdna:known chromosome:CEL140:I:9509445:9513197:1 gene:F30A10.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9509375-9512657(+) 100.0 100.0
Public Domain and Genome References
Ensembl F30A10.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03028 Hypothetical protein F30A10.8b [Caenorhabditis elegans] ref|NP_492522.1| F30A10.8b [Caenorhabditis elegans] 0.0
blast CAB03025 Hypothetical protein F30A10.8a [Caenorhabditis elegans] ref|NP_492521.1| F30A10.8a [Caenorhabditis elegans] sp|Q93646|SNT1_CAEEL Syntrophin-1 0.0
blast CAE56710 Hypothetical protein CBG24496 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 8.6E-21
Pfam IPR001849 EMBL-EBI Pleckstrin-like 5.7E-13
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 8.6E-21
Pfam IPR001849 EMBL-EBI Pleckstrin-like 5.7E-13
Sequence
Target Sequence 
>C. ELEGANS:193201_S_AT
tataatgctcggtaacaacccccaagtgagacatatgggttggattgcagaacaagtatc
agaaaatggaatttcaatgtggaaacctaaatttatgacgcttacgaatagtgagatctt
gttctatgaagctgttccacagctgaaagcagaatgggcagagccaagactagtacgtcc
tctggtggcaacaagagtcgttcagacaagttctcgaactgcgccagtaattaaaggtct
cactgatgtgatctctttccgtatgagaactggaactcaacaaggtgttcggacacatac
gatccgggtagaaactcatgcagaactggcacgatgggttcgtgcagtagtgatcggtgg
atatgaagcatgtctttctacatctcaagtctctgctccttgtctttggcgaggcgaatc
atgcgaactaatagttaatctagacaatggaatatcattactttcgtcgactggagaggt
actgtggcaacattcgtttgaaacgattcgcgccaccggcgatgatggtggtcgttttct
ctgggtcgattttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATAATGCTCGGTAACAACCCCCAA 83 659 669 Antisense
GAGCCAAGACTAGTACGTCCTCTGG 213 385 829 Antisense
CAAGTTCTCGAACTGCGCCAGTAAT 378 185 875 Antisense
CTCACTGATGTGATCTCTTTCCGTA 206 229 907 Antisense
GGGTTCGTGCAGTAGTGATCGGTGG 363 497 1004 Antisense
GAAGCATGTCTTTCTACATCTCAAG 686 341 1033 Antisense
CTCCTTGTCTTTGGCGAGGCGAATC 167 235 1064 Antisense
AATATCATTACTTTCGTCGACTGGA 646 173 1119 Antisense
GAGGTACTGTGGCAACATTCGTTTG 585 401 1144 Antisense
TTCGCGCCACCGGCGATGATGGTGG 628 697 1175 Antisense
GTCGTTTTCTCTGGGTCGATTTTGG 599 471 1199 Antisense
Sequence Source Affymetrix Proprietary Database