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[193200_s_at]

Description C47B2.6 /REP_DB=WormBase Gene ID /WP=CE17566 /TR=O62107 /GB=CAB16861.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=NAD dependant epimerase-dehydratase family
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 21      4grp_highest_8_8 > 17      4grp_high_8_8 > 60      6grp_highest_nonorm > 76      6grp_total > 32      4grp_total > 59      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1335
1 2 3 4 range
A 1096.5
(1.7)
P 		1088
(1.7)
P 		1308.9
(3)
P 		325.8
(-3)
P 		983
B 1046.5
(0.1)
P 		1384.3
(1.9)
P 		1609
(3)
P 		431.2
(-3)
P 		1178
C 1169.6
(0.8)
P 		1294.3
(1.4)
P 		1661
(3)
P 		326.3
(-3)
P 		1335
avr 1104.2
(0.8) 		1255.5
(1.6) 		1526.3
(3) 		361.1
(-3) 		1165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 587
1 2 3 4 5 6 range
A 844.5
(-3)
P 		1211.3
(2.5)
P 		1247.5
(3)
P 		1101.3
(0.8)
P 		956.4
(-1.3)
P 		885.1
(-2.4)
P 		403
B 1320.1
(1.9)
P 		1257
(1.2)
P 		1430.3
(3)
P 		1087.3
(-0.5)
P 		1092.8
(-0.4)
P 		843.2
(-3)
P 		587
C 1304.5
(3)
P 		1140.8
(0.4)
P 		1095.8
(-0.3)
P 		1177.4
(1)
P 		1018.9
(-1.6)
P 		928.8
(-3)
P 		376
avr 1156.4
(1.4) 		1203
(2.1) 		1257.9
(3) 		1122
(0.8) 		1022.7
(-0.8) 		885.7
(-3) 		372
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 531
1 2 3 4 range
A 399.3
(3)
P 		236.2
(0.2)
P 		342.2
(2)
P 		47.7
(-3)
P 		352
B 333.7
(2.2)
P 		341.9
(2.3)
P 		372.8
(3)
P 		91.9
(-3)
P 		281
C 387.2
(0.8)
P 		372.1
(0.6)
P 		578.9
(3)
P 		55
(-3)
P 		524
avr 373.4
(2.1) 		316.7
(1.1) 		431.3
(3) 		64.9
(-3) 		366

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 328
1 2 3 4 5 6 range
A 155.7
(-3)
P 		430.8
(3)
P 		271.7
(-0.5)
P 		279.3
(-0.3)
P 		288.6
(-0.1)
P 		215.5
(-1.7)
P 		275
B 459.3
(3)
P 		418.4
(1.6)
P 		347.3
(-0.9)
P 		288
(-3)
P 		444
(2.5)
P 		314.4
(-2.1)
P 		171
C 483.5
(3)
P 		348.1
(-0.3)
P 		278.9
(-2)
P 		236.8
(-3)
P 		329.7
(-0.7)
P 		310.9
(-1.2)
P 		247
avr 366.2
(1.5) 		399.1
(3) 		299.3
(-1.6) 		268
(-3) 		354.1
(0.9) 		280.3
(-2.4) 		131
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193200_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2466
Sequence Type Exemplar sequence
Representative Public ID C47B2.6 NCBI
Target Description C47B2.6 /REP_DB=WormBase Gene ID /WP=CE17566 /TR=O62107 /GB=CAB16861.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=NAD dependant epimerase-dehydratase family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025880(11), NM_001025881(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025880 NCBI Caenorhabditis elegans C47B2.6a (C47B2.6) mRNA, complete cds. 11/11 None
NM_001025881 NCBI Caenorhabditis elegans C47B2.6b (C47B2.6) mRNA, complete cds. 11/11 None
GENEFINDER00000041239 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12983326:12986737:1 11/11 None
SNAP00000041235 ENSEMBL cdna:SNAP chromosome:CEL140:I:12983510:12986620:1 11/11 None
C47B2.6 ENSEMBL cdna:known chromosome:CEL140:I:12983305:12986869:1 gene:C47B2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12983256-12986551(+) 99.62 100.0
Public Domain and Genome References
Ensembl C47B2.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16861 Hypothetical protein C47B2.6a [Caenorhabditis elegans] ref|NP_001021051.1| C47B2.6a [Caenorhabditis elegans] 0.0
blast CAI79146 Hypothetical protein C47B2.6b [Caenorhabditis elegans] ref|NP_001021052.1| C47B2.6b [Caenorhabditis elegans] 0.0
blast CAE63468 Hypothetical protein CBG07935 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001509 EMBL-EBI NAD-dependent epimerase/dehydratase 1.0E-126
Pfam IPR001509 EMBL-EBI NAD-dependent epimerase/dehydratase 1.0E-126
Pfam IPR001509 EMBL-EBI NAD-dependent epimerase/dehydratase 9.1E-122
Sequence
Target Sequence 
>C. ELEGANS:193200_S_AT
accggccagggaattactaatccatatggtcaaactaaatacatgatggaacaaatttta
attgacgtcggaaaagcgaatcccgaatggaatgtggttcttcttcgttactttaatcca
gttggagcacacaaatcagggctcattggagaagatccaaagggtgtaccgaataattta
atgccatacgtcagtcaggtggctattggaaaactgccagtactcactatttatggagat
caatttgatactgttgatggaactggtgttcgggattatattcatgttgttgatcttgct
aaaggacatgttaaggcttttgatagaattaagaccgtcggaaacattggaaccgagatt
tacaatcttggaaccggtgtcggttactcggttcgtcagatggttgatgcgttgaaaaag
gtcagcggacgtgatattccggttaagatcggagtcccccgtcccggagacgttgcatca
gtctactgcgacccctcacttgctcaggagaagctcggatggcgtgccgagactggtctc
gaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCGGCCAGGGAATTACTAATCCAT 603 87 454 Antisense
GAATGTGGTTCTTCTTCGTTACTTT 664 331 543 Antisense
AGCACACAAATCAGGGCTCATTGGA 177 75 579 Antisense
CCATACGTCAGTCAGGTGGCTATTG 108 271 637 Antisense
GAAAACTGCCAGTACTCACTATTTA 460 355 662 Antisense
TTACAATCTTGGAACCGGTGTCGGT 296 671 813 Antisense
TCGGTTACTCGGTTCGTCAGATGGT 245 593 833 Antisense
GGTCAGCGGACGTGATATTCCGGTT 559 287 873 Antisense
GACGTTGCATCAGTCTACTGCGACC 126 379 922 Antisense
CAGGAGAAGCTCGGATGGCGTGCCG 209 209 958 Antisense
ATGGCGTGCCGAGACTGGTCTCGAA 497 49 972 Antisense
Sequence Source Affymetrix Proprietary Database