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[193199_at]

Description F10D7.5 /REP_DB=WormBase Gene ID /WP=CE04355 /CHR=X /FEA=Sanger Annotation /DEF=D. melanogaster finger protein neuralized (ST.LOUIS) TR:Q19299 protein_id:AAA81723.1
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 09      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 91      6grp_total > 93      4grp_total > 21      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 343
1 2 3 4 range
A 442
(2.4)
P 		243
(-1.1)
P 		135.2
(-3)
P 		478.3
(3)
P 		343
B 381
(2.5)
P 		195.3
(-2.4)
P 		171.6
(-3)
P 		398.1
(3)
P 		227
C 271.1
(-0.3)
P 		205.7
(-2.4)
P 		188
(-3)
P 		373
(3)
P 		185
avr 364.7
(1.8) 		214.7
(-1.8) 		164.9
(-3) 		416.5
(3) 		252

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 233.1
(2)
P 		205.1
(0.8)
P 		120.5
(-3)
P 		163.7
(-1.1)
P 		254.9
(3)
P 		209.7
(1)
P 		134
B 213.9
(3)
P 		178.2
(-1.2)
P 		162.9
(-3)
P 		213.4
(2.9)
P 		177.1
(-1.3)
P 		186.8
(-0.2)
P 		51
C 185.9
(-3)
P 		215.8
(-1)
P 		228.9
(-0.1)
P 		219.3
(-0.7)
P 		274.9
(3)
P 		209
(-1.4)
P 		89
avr 211
(0.7) 		199.7
(-0.3) 		170.8
(-3) 		198.8
(-0.4) 		235.6
(3) 		201.8
(-0.1) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 160.9
(3)
P 		52.8
(-2.2)
P 		35.4
(-3)
P 		70
(-1.3)
P 		126
B 121.5
(3)
P 		48.2
(-2.4)
P 		39.8
(-3)
P 		84.8
(0.3)
P 		82
C 89.7
(3)
P 		59.1
(-3)
P 		65.5
(-1.7)
P 		62.9
(-2.3)
P 		31
avr 124
(3) 		53.4
(-2.5) 		46.9
(-3) 		72.6
(-1) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 43
(-1)
P 		73
(2.5)
P 		26.2
(-3)
P 		41.5
(-1.2)
P 		76.9
(3)
P 		51.1
(-0.1)
P 		51
B 74.4
(3)
P 		59.3
(0.4)
P 		39.6
(-3)
P 		56.5
(-0.1)
P 		71.9
(2.6)
P 		69.7
(2.2)
P 		35
C 68.9
(0.3)
P 		65.8
(-0.1)
P 		58.3
(-1.1)
P 		44.1
(-3)
P 		89
(3)
P 		70
(0.5)
P 		45
avr 62.1
(0.3) 		66
(0.9) 		41.4
(-3) 		47.4
(-2.1) 		79.3
(3) 		63.6
(0.5) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193199_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17740
Sequence Type Exemplar sequence
Representative Public ID F10D7.5 NCBI
Target Description F10D7.5 /REP_DB=WormBase Gene ID /WP=CE04355 /CHR=X /FEA=Sanger Annotation /DEF=D. melanogaster finger protein neuralized (ST.LOUIS) TR:Q19299 protein_id:AAA81723.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078417(11), NM_078418(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078417 NCBI Caenorhabditis elegans F10D7.5a (F10D7.5) mRNA, complete cds. 11/11 None
NM_078418 NCBI Caenorhabditis elegans F10D7.5c (F10D7.5) mRNA, complete cds. 11/11 None
SNAP00000025750 ENSEMBL cdna:SNAP chromosome:CEL140:X:17383521:17386869:-1 11/11 None
GENEFINDER00000025756 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17383521:17392302:-1 11/11 None
F10D7.5a ENSEMBL cdna:known chromosome:CEL140:X:17383048:17391473:-1 gene:F10D7.5 11/11 A 
F10D7.5c ENSEMBL cdna:known chromosome:CEL140:X:17383521:17386218:-1 gene:F10D7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181767 4 2 NM_078417 174632_at (11), 193199_at (11)
NM_078418 193199_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17383520-17392301(-) 100.0 100.0
Public Domain and Genome References
Ensembl F10D7.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAS80344 Hypothetical protein F10D7.5a [Caenorhabditis elegans] ref|NP_510818.3| F10D7.5a [Caenorhabditis elegans] 0.0
blast T16028 hypothetical protein F10D7.5 - Caenorhabditis elegans 0.0
blast AAS80346 Hypothetical protein F10D7.5c [Caenorhabditis elegans] ref|NP_510819.3| F10D7.5c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006573 EMBL-EBI NEUZ 7.5E-51
Pfam IPR006573 EMBL-EBI NEUZ 3.3E-51
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.1E-7
Pfam IPR006573 EMBL-EBI NEUZ 3.3E-51
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.1E-7
Pfam IPR006573 EMBL-EBI NEUZ 3.3E-51
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.1E-7
Pfam IPR006573 EMBL-EBI NEUZ 7.5E-51
Pfam IPR006573 EMBL-EBI NEUZ 3.3E-51
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.1E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000025756 3 46-68,130-152,422-444
Sequence
Target Sequence 
>C. ELEGANS:193199_AT
caaccactttcgattccgagacggcctgccagaattcctgacggcgcaccatcgtcctcg
tcgtacctggcgccagcagttccagcacgtgctccgccaccggtgccgcagagtccgttg
agagtcaatgttcgtgattccctggaaggctcctcaagtacaccagctctctccacaacg
cgcccaaccatcgacgatcttctcggggagatcatcccctcaactcctcctccagttgca
ccaagggcagttcttggttcttcctcatctacatctcgcctaccaaacagatcttctcca
gcgacaacgactgcgatgatgtcgccgccttccttcaacccaccgccacttccagcatcg
ttccagagaaatgaaggaaatggggcacaagaggttaacgaaggagacgaatgcactatt
tgcatggacgcaccagtgaactctgtgctctacacatgcggtcacatgtgcatgtgcttt
gagtgtggtcgtcgccttctgaccacaaagggaacttgcccgatctgccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACCACTTTCGATTCCGAGACGGC 373 187 1918 Antisense
TGCCGCAGAGTCCGTTGAGAGTCAA 594 585 2021 Antisense
TTCCCTGGAAGGCTCCTCAAGTACA 546 693 2055 Antisense
CAACCATCGACGATCTTCTCGGGGA 486 185 2102 Antisense
CAAGGGCAGTTCTTGGTTCTTCCTC 198 183 2159 Antisense
TACCAAACAGATCTTCTCCAGCGAC 70 651 2198 Antisense
CAACGACTGCGATGATGTCGCCGCC 639 187 2222 Antisense
GCATGGACGCACCAGTGAACTCTGT 164 311 2339 Antisense
AACTCTGTGCTCTACACATGCGGTC 470 139 2356 Antisense
ATGTGCTTTGAGTGTGGTCGTCGCC 258 49 2389 Antisense
CAAAGGGAACTTGCCCGATCTGCCG 47 193 2423 Antisense
Sequence Source Affymetrix Proprietary Database