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[193198_s_at] 40S ribosomal protein S17

Description T08B2.10 /REP_DB=WormBase Gene ID /WP=CE26948 /GEN=rps-17 /TR=SW:O01692 /GB=AAG00017.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=40S ribosomal protein S17
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 09      6grp_total > 41      4grp_total > 17      6grp_highest_sub > 03      6grp_cgc > 82      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23298
1 2 3 4 range
A 28500.8
(-3)
P 		39464.7
(-0.1)
P 		36330.7
(-0.9)
P 		50906.1
(3)
P 		22405
B 29822.5
(-3)
P 		32147.1
(-1.6)
P 		37675.3
(1.8)
P 		39547.7
(3)
P 		9725
C 27608.6
(-3)
P 		32025.4
(-1.7)
P 		29400.4
(-2.5)
P 		47891.1
(3)
P 		20283
avr 28644
(-3) 		34545.7
(-1) 		34468.8
(-1) 		46115
(3) 		17471

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10785
1 2 3 4 5 6 range
A 27650.8
(1.5)
P 		24337.9
(-0.8)
P 		29732.2
(3)
P 		27739.6
(1.6)
P 		21165.8
(-3)
P 		23019.7
(-1.7)
P 		8566
B 23160.7
(-0.8)
P 		23532.7
(-0.6)
P 		30079.9
(3)
P 		23469.8
(-0.7)
P 		21003.4
(-2)
P 		19295.1
(-3)
P 		10785
C 22120.8
(-2.7)
P 		24972.7
(0.3)
P 		27530.4
(3)
P 		25419
(0.8)
P 		22617.8
(-2.2)
P 		21859.1
(-3)
P 		5671
avr 24310.8
(-0.7) 		24281.1
(-0.8) 		29114.2
(3) 		25542.8
(0.2) 		21595.7
(-2.8) 		21391.3
(-3) 		7723
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2926
1 2 3 4 range
A 10377.2
(3)
P 		8566.7
(-0.7)
P 		9497.6
(1.2)
P 		7451.7
(-3)
P 		2926
B 9510.1
(3)
P 		7939.6
(-3)
P 		8730.2
(0)
P 		8427.6
(-1.1)
P 		1571
C 9139.2
(-0.1)
P 		9207.5
(0.1)
P 		10246.9
(3)
P 		8075.2
(-3)
P 		2172
avr 9675.5
(3) 		8571.3
(-0.9) 		9491.6
(2.3) 		7984.8
(-3) 		1691

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3559
1 2 3 4 5 6 range
A 5097.2
(-3)
P 		8655.7
(3)
P 		6475.1
(-0.7)
P 		7035.4
(0.3)
P 		6386.9
(-0.8)
P 		5604.6
(-2.1)
P 		3559
B 8058.8
(1.8)
P 		7833.1
(1.2)
P 		7304.3
(-0.2)
P 		6216.3
(-3)
P 		8533.4
(3)
P 		7195
(-0.5)
P 		2317
C 8199.2
(3)
P 		7619.9
(1.9)
P 		7006.9
(0.7)
P 		5111.8
(-3)
P 		7318.8
(1.3)
P 		7317.5
(1.3)
P 		3087
avr 7118.4
(0.1) 		8036.2
(3) 		6928.8
(-0.5) 		6121.2
(-3) 		7413
(1) 		6705.7
(-1.2) 		1915
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193198_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2241
Sequence Type Exemplar sequence
Representative Public ID T08B2.10 NCBI
Target Description T08B2.10 /REP_DB=WormBase Gene ID /WP=CE26948 /GEN=rps-17 /TR=SW:O01692 /GB=AAG00017.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=40S ribosomal protein S17
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059394(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059394 NCBI Caenorhabditis elegans Ribosomal Protein, Small subunit family member (rps-17) (rps-17) mRNA, complete cds. 11/11 A 
SNAP00000035005 ENSEMBL cdna:SNAP chromosome:CEL140:I:6228284:6228885:-1 11/11 None
GENEFINDER00000035020 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6228284:6228885:-1 11/11 None
T08B2.10.2 ENSEMBL cdna:known chromosome:CEL140:I:6228075:6228899:-1 gene:T08B2.10 11/11 None
T08B2.10.1 ENSEMBL cdna:known chromosome:CEL140:I:6228075:6228901:-1 gene:T08B2.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6228389-6228814(-) 100.0 100.0
Public Domain and Genome References
Gene Title 40S ribosomal protein S17
Gene Symbol rps-17
Ensembl T08B2.10
Entrez Gene 172313 Entrez gene
SwissProt O01692 EMBL-EBI
WormBase CE26948 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250862_S_AT 40S ribosomal protein S17 (RPS17A) at
CANINE:1603768_X_AT Ribosomal protein S17 cfa
CANINE:1603176_AT Ribosomal protein S17 cfa
CANINE:1592199_X_AT Ribosomal protein S17 cfa
CANINE:1592198_AT Ribosomal protein S17 cfa
CANINE:1591146_X_AT Ribosomal protein S17 cfa
CANINE:1591145_S_AT Ribosomal protein S17 cfa
CANINE:1583293_X_AT Ribosomal protein S17 cfa
CANINE_2:CFA.1201.1.A1_S_AT Ribosomal protein S17 cfa
CANINE_2:CFA.1201.1.A1_X_AT Ribosomal protein S17 cfa
CANINE_2:CFA.1201.1.A2_AT Ribosomal protein S17 cfa
CANINE:1583367_S_AT Ribosomal protein S17 cfa
CANINE:1594516_AT Ribosomal protein S17 cfa
CANINE:1594517_AT Ribosomal protein S17 cfa
CANINE:1595878_AT Ribosomal protein S17 cfa
CANINE:1599484_AT Ribosomal protein S17 cfa
DROSOPHILA_2:1624529_AT Ribosomal protein S17 dm
DROSGENOME1:143542_AT Ribosomal protein S17 dm
CHICKEN:GGA.5153.1.S1_A_AT ribosomal protein S17 gga
CHICKEN:GGA.5153.1.S1_AT ribosomal protein S17 gga
CHICKEN:GGA.5153.1.S1_X_AT ribosomal protein S17 gga
HG-U133A:201665_X_AT ribosomal protein S17 hs
HG-U133_PLUS_2:201665_X_AT ribosomal protein S17 hs
HG-FOCUS:201665_X_AT ribosomal protein S17 hs
HG-U133A_2:201665_X_AT ribosomal protein S17 hs
HG-U133_PLUS_2:211487_X_AT ribosomal protein S17 hs
HG-U133A:211487_X_AT ribosomal protein S17 hs
HG-U133A_2:211487_X_AT ribosomal protein S17 hs
HUGENEFL:M18000_AT ribosomal protein S17 hs
U133_X3P:G4506692_3P_X_AT ribosomal protein S17 hs
U133_X3P:G4506692_3P_S_AT ribosomal protein S17 hs
U133_X3P:G4506692_3P_A_AT ribosomal protein S17 hs
U133_X3P:G13436139_3P_S_AT ribosomal protein S17 hs
U133_X3P:HS.5174.2.S1_3P_X_AT ribosomal protein S17 hs
U133_X3P:HS.5174.2.S1_3P_S_AT ribosomal protein S17 hs
U133_X3P:HS.283833.0.S1_3P_AT ribosomal protein S17 hs
U133_X3P:212578_3P_X_AT ribosomal protein S17 hs
U133_X3P:211487_3P_X_AT ribosomal protein S17 hs
U133_X3P:201665_3P_X_AT ribosomal protein S17 hs
HG-U133A_2:212578_X_AT ribosomal protein S17 hs
HG-U133_PLUS_2:212578_X_AT ribosomal protein S17 hs
HG-U133A:212578_X_AT ribosomal protein S17 hs
HG-U133A_2:216348_AT ribosomal protein S17 hs
HG-U133_PLUS_2:216348_AT ribosomal protein S17 hs
HG-U133A:216348_AT ribosomal protein S17 hs
HG-U95AV2:34592_AT ribosomal protein S17 hs
HG-U95AV2:34593_G_AT ribosomal protein S17 hs
MOE430A:1438986_X_AT ribosomal protein S17 mm
MOUSE430A_2:1438986_X_AT ribosomal protein S17 mm
MOUSE430_2:1438986_X_AT ribosomal protein S17 mm
MOUSE430_2:1459986_A_AT ribosomal protein S17 mm
MOE430A:1459986_A_AT ribosomal protein S17 mm
MOUSE430A_2:1459986_A_AT ribosomal protein S17 mm
MOE430A:1438502_X_AT ribosomal protein S17 mm
MOUSE430A_2:1438502_X_AT ribosomal protein S17 mm
MOUSE430_2:1438502_X_AT ribosomal protein S17 mm
MG-U74AV2:99590_AT ribosomal protein S17 mm
MOUSE430A_2:1437510_X_AT ribosomal protein S17 mm
MOE430A:1437510_X_AT ribosomal protein S17 mm
MOUSE430_2:1437510_X_AT ribosomal protein S17 mm
MU11KSUBA:C79471_RC_AT ribosomal protein S17 mm
MU11KSUBA:D25213_F_AT ribosomal protein S17 mm
MG-U74AV2:102129_AT ribosomal protein S17 mm
MOE430A:1455662_X_AT ribosomal protein S17 mm
MOUSE430A_2:1455662_X_AT ribosomal protein S17 mm
MOUSE430_2:1455662_X_AT ribosomal protein S17 mm
MOE430A:1438776_X_AT ribosomal protein S17 mm
MOUSE430A_2:1438776_X_AT ribosomal protein S17 mm
MOUSE430_2:1438776_X_AT ribosomal protein S17 mm
YEAST_2:1769390_S_AT Ribosomal protein 51 (rp51) of the small (40s) subunit; nearly identical to Rps17Ap and has similarity to rat S17 ribosomal protein Sc
YEAST_2:1769503_AT Ribosomal protein 51 (rp51) of the small (40s) subunit; nearly identical to Rps17Ap and has similarity to rat S17 ribosomal protein Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_491795 Ribosomal Protein, Small subunit family member (rps-17) [Caenorhabditis elegans] gb|AAG00017.2| Ribosomal protein, small subunit protein 17 [Caenorhabditis elegans] sp|O01692|RS17_CAEEL 40S ribosomal protein S17 9.0E-69
blast CAE67143 Hypothetical protein CBG12566 [Caenorhabditis briggsae] 8.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR001210 EMBL-EBI Ribosomal protein S17e 4.9E-84
Sequence
Target Sequence 
>C. ELEGANS:193198_S_AT
gtctgtgacgaggttgccatcatcggaagcaagccactcagaaacaagatcgctggatac
atcactcacttgatgagacgtatcgagagaggaccagtcagaggtatctccatcaagctt
caagaagaggagcgtgagcgcagagacaactacatgccagagatctccactgttgatcca
tctcaactcacctccatcaaggttgacactgataccagcgacatgctcaaggccgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTGTGACGAGGTTGCCATCATCG 407 471 112 Antisense
CATCATCGGAAGCAAGCCACTCAGA 262 211 129 Antisense
AGATCGCTGGATACATCACTCACTT 466 67 158 Antisense
GAGGACCAGTCAGAGGTATCTCCAT 97 405 200 Antisense
GAGGTATCTCCATCAAGCTTCAAGA 232 403 212 Antisense
GAGCGTGAGCGCAGAGACAACTACA 349 387 241 Antisense
GACAACTACATGCCAGAGATCTCCA 456 365 256 Antisense
AGATCTCCACTGTTGATCCATCTCA 655 65 272 Antisense
AACTCACCTCCATCAAGGTTGACAC 294 141 296 Antisense
AGGTTGACACTGATACCAGCGACAT 562 57 311 Antisense
TACCAGCGACATGCTCAAGGCCGCT 237 649 324 Antisense
Sequence Source Affymetrix Proprietary Database