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[193196_at] 7TM chemoreceptor (srd-family)

Description W06G6.3 /REP_DB=WormBase Gene ID /WP=CE20153 /GEN=srd-21 /TR=Q9U338 /GB=CAB63327.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM chemoreceptor (srd-family)
Cluster 6grp_total > 09      4grp_total > 36      6grp_cgc > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 31.3
(-0.8)
A 		56.2
(1.6)
A 		8.4
(-3)
A 		70.1
(3)
A 		62
B 4.9
(-2.3)
A 		11.3
(3)
A 		5.4
(-1.9)
A 		4.1
(-3)
A 		7
C 37
(3)
A 		33.6
(2.4)
A 		3.5
(-3)
A 		9.6
(-1.9)
A 		34
avr 24.4
(1) 		33.7
(3) 		5.8
(-3) 		27.9
(1.8) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 10.7
(1)
A 		2.6
(-3)
A 		14.9
(3)
A 		4.4
(-2.1)
A 		6.2
(-1.2)
A 		2.6
(-3)
A 		12
B 8.2
(3)
A 		3.7
(-3)
A 		4.5
(-1.9)
A 		7.3
(1.8)
A 		6.7
(1)
A 		3.7
(-3)
A 		5
C 17.5
(3)
A 		2.7
(-2.8)
A 		2.1
(-3)
A 		5.8
(-1.6)
A 		4
(-2.3)
A 		2.2
(-3)
A 		15
avr 12.1
(3) 		3
(-2.9) 		7.2
(-0.2) 		5.8
(-1.1) 		5.6
(-1.2) 		2.8
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.4
(2.5)
A 		12.2
(3)
A 		2.2
(-3)
A 		10.3
(1.9)
A 		10
B 1.6
(-0.8)
A 		2.8
(3)
A 		1.2
(-2.1)
A 		0.9
(-3)
A 		2
C 12.2
(3)
A 		9.7
(1.6)
A 		1.2
(-3)
A 		1.6
(-2.8)
A 		11
avr 8.4
(3) 		8.2
(2.8) 		1.5
(-3) 		4.3
(-0.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 2
(0.2)
A 		0.9
(-2.3)
A 		3.2
(3)
A 		1.1
(-1.8)
A 		1.9
(-0)
A 		0.6
(-3)
A 		3
B 2.9
(3)
A 		1.2
(-2.7)
A 		1.1
(-3)
A 		1.9
(-0.3)
A 		2.7
(2.3)
A 		1.4
(-2)
A 		2
C 6.5
(3)
A 		0.8
(-2.7)
A 		0.5
(-3)
A 		1.2
(-2.3)
A 		1.3
(-2.2)
A 		0.8
(-2.7)
A 		6
avr 3.8
(3) 		1
(-2.8) 		1.6
(-1.6) 		1.4
(-2) 		2
(-0.7) 		0.9
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193196_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14781
Sequence Type Exemplar sequence
Representative Public ID W06G6.3 NCBI
Target Description W06G6.3 /REP_DB=WormBase Gene ID /WP=CE20153 /GEN=srd-21 /TR=Q9U338 /GB=CAB63327.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM chemoreceptor (srd-family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074806(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074806 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-21) (srd-21) mRNA, complete cds. 11/11 None
SNAP00000000225 ENSEMBL cdna:SNAP chromosome:CEL140:V:16632578:16633737:1 11/11 None
W06G6.3 ENSEMBL cdna:known chromosome:CEL140:V:16632482:16633737:1 gene:W06G6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000000249 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16632481-16633737(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor (srd-family)
Gene Symbol srd-21
Ensembl W06G6.3
Entrez Gene 191810 Entrez gene
SwissProt Q9U338 EMBL-EBI
WormBase CE20153 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63327 Hypothetical protein W06G6.3 [Caenorhabditis elegans] ref|NP_507207.1| Serpentine Receptor, class D (delta) family member (srd-21) [Caenorhabditis elegans] 1.0E-179
blast CAB63327 Hypothetical protein W06G6.3 [Caenorhabditis elegans] ref|NP_507207.1| Serpentine Receptor, class D (delta) family member (srd-21) [Caenorhabditis elegans] 1.0E-161
blast CAE61203 Hypothetical protein CBG04991 [Caenorhabditis briggsae] 3.0E-90
blast CAE61203 Hypothetical protein CBG04991 [Caenorhabditis briggsae] 3.0E-81
blast CAE68107 Hypothetical protein CBG13750 [Caenorhabditis briggsae] 5.0E-50
blast CAE68114 Hypothetical protein CBG13757 [Caenorhabditis briggsae] 4.0E-45
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507207.1 7 4-26,35-57,91-113,120-142,181-203,231-253,263-285
W06G6.3 7 4-26,35-57,91-113,120-142,181-203,231-253,263-285
SNAP00000000225 6 20-39,54-76,88-110,149-171,199-221,231-253
Sequence
Target Sequence 
>C. ELEGANS:193196_AT
tacaaggatccaagtctcatcgccttcctgttcaccgcaatcgtcacatacttcccattg
ttcatcaactcctcattttggatcaataccttcaacatttgggccgccaactcggatcaa
cacggacctcgactattttcaaagcctggtgatctggtgatggccggttgggtggttgat
cagttcaacatgatgtcactggcttttctgatggttacttctgtggtcacgttttgcgga
tccctttggattcgacactttctagtgaggttcttgaaggagaagactgcaaggttgtca
aaaactacgatcctgttaaatatgcagttggttaaggccctccatctccaatccgctatc
ccaattctcactttcctggccgtactcaacttgatcttcatgcactactctttgattggg
ccgattcgacttcaagcaatttcatcagccatctttgcagcaactcttagcatctttcca
atcagctacattttatttctacctccgtttttcaagttctgtattgccaatcccggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAAGGATCCAAGTCTCATCGCCT 606 641 355 Antisense
TCAACACGGACCTCGACTATTTTCA 544 627 471 Antisense
GTCACTGGCTTTTCTGATGGTTACT 442 465 549 Antisense
TTCTGTGGTCACGTTTTGCGGATCC 178 693 573 Antisense
TGCGGATCCCTTTGGATTCGACACT 208 583 589 Antisense
TATGCAGTTGGTTAAGGCCCTCCAT 411 657 675 Antisense
CATGCACTACTCTTTGATTGGGCCG 648 209 753 Antisense
GATTGGGCCGATTCGACTTCAAGCA 588 435 768 Antisense
ATTTCATCAGCCATCTTTGCAGCAA 16 17 793 Antisense
CAACTCTTAGCATCTTTCCAATCAG 59 189 815 Antisense
AAGTTCTGTATTGCCAATCCCGGAA 169 157 868 Antisense
Sequence Source Affymetrix Proprietary Database