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[193193_at] androgen-dependent expressed protein like

Description C37E2.3 /REP_DB=WormBase Gene ID /WP=CE08622 /TR=Q93355 /GB=CAB02824.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=androgen-dependent expressed protein like
Cluster 6grp_total > 63      4grp_total > 32      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 10.7
(-3)
A 		14.8
(-0.3)
A 		14.8
(-0.3)
A 		19.7
(3)
A 		9
B 12.3
(-1.7)
A 		8.7
(-3)
A 		25.3
(3)
A 		8.9
(-2.9)
A 		17
C 10.3
(-3)
A 		11.9
(-1.9)
A 		18.7
(2.7)
A 		19.2
(3)
A 		9
avr 11.1
(-3) 		11.8
(-2.5) 		19.6
(3) 		15.9
(0.4) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 5.4
(-2.6)
A 		3.1
(-3)
A 		40.7
(3)
A 		9.8
(-1.9)
A 		10.1
(-1.9)
A 		4.5
(-2.8)
A 		38
B 5.7
(-2.5)
A 		8.8
(-1.5)
A 		14.6
(0.4)
A 		22.3
(3)
A 		4.3
(-3)
A 		4.4
(-3)
A 		18
C 9.2
(-2)
A 		6.7
(-3)
A 		10.9
(-1.3)
A 		14.8
(0.4)
A 		11.1
(-1.2)
A 		21.1
(3)
A 		14
avr 6.8
(-2.8) 		6.2
(-3) 		22.1
(3) 		15.6
(0.5) 		8.5
(-2.1) 		10
(-1.6) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 3.9
(3)
A 		3.2
(-1.2)
A 		3.9
(3)
A 		2.9
(-3)
A 		1
B 3.9
(0)
A 		2.1
(-2.7)
A 		5.9
(3)
A 		1.9
(-3)
A 		4
C 3.4
(-2.6)
A 		3.4
(-2.6)
A 		6.5
(3)
A 		3.2
(-3)
A 		3
avr 3.7
(-0.8) 		2.9
(-2.6) 		5.4
(3) 		2.7
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1
(-3)
A 		1.1
(-2.9)
A 		8.9
(3)
A 		2.5
(-1.9)
A 		3
(-1.5)
A 		1.1
(-2.9)
A 		8
B 2
(-2.4)
A 		2.9
(-1.2)
A 		3.5
(-0.3)
A 		5.9
(3)
A 		1.7
(-2.9)
A 		1.6
(-3)
A 		4
C 3.4
(-1.4)
A 		2
(-3)
A 		2.8
(-2.1)
A 		3
(-1.8)
A 		3.6
(-1.1)
A 		7.1
(3)
A 		5
avr 2.1
(-2.8) 		2
(-3) 		5.1
(3) 		3.8
(0.5) 		2.8
(-1.5) 		3.3
(-0.5) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193193_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17333
Sequence Type Exemplar sequence
Representative Public ID C37E2.3 NCBI
Target Description C37E2.3 /REP_DB=WormBase Gene ID /WP=CE08622 /TR=Q93355 /GB=CAB02824.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=androgen-dependent expressed protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077963(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077963 NCBI Caenorhabditis elegans C37E2.3 (C37E2.3) mRNA, complete cds. 11/11 None
GENEFINDER00000011529 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14180371:14181625:1 11/11 None
C37E2.3 ENSEMBL cdna:known chromosome:CEL140:X:14178908:14181625:1 gene:C37E2.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011522 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14178907-14181625(+) 100.0 100.0
Public Domain and Genome References
Gene Title androgen-dependent expressed protein like
Ensembl C37E2.3
Entrez Gene 183293 Entrez gene
SwissProt Q93355 EMBL-EBI
WormBase CE08622 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02824 Hypothetical protein C37E2.3 [Caenorhabditis elegans] ref|NP_510364.1| C37E2.3 [Caenorhabditis elegans] 1.0E-170
blast CAB02824 Hypothetical protein C37E2.3 [Caenorhabditis elegans] ref|NP_510364.1| C37E2.3 [Caenorhabditis elegans] 1.0E-123
blast CAB02823 Hypothetical protein C37E2.2a [Caenorhabditis elegans] ref|NP_001024448.1| C37E2.2a [Caenorhabditis elegans] 4.0E-65
blast CAB02823 Hypothetical protein C37E2.2a [Caenorhabditis elegans] ref|NP_001024448.1| C37E2.2a [Caenorhabditis elegans] 8.0E-65
blast CAE69934 Hypothetical protein CBG16310 [Caenorhabditis briggsae] 3.0E-64
blast CAE69934 Hypothetical protein CBG16310 [Caenorhabditis briggsae] 5.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR006838 EMBL-EBI FAR-17a/AIG1-like protein 2.3E-100
Pfam IPR006838 EMBL-EBI FAR-17a/AIG1-like protein 2.3E-100
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510364.1 8 7-24,34-53,83-105,118-140,152-174,184-206,219-241,256-278
C37E2.3 8 7-24,34-53,83-105,118-140,152-174,184-206,219-241,256-278
GENEFINDER00000011529 6 5-27,37-59,72-94,104-126,138-160,175-197
Sequence
Target Sequence 
>C. ELEGANS:193193_AT
gtttccagtactctgtgtcgtttggctagctgcgttatgctttgatttcttgcaacaacc
acgattgaaccacagttggtacatctacaagctcattttactcactaatttggcatttgt
cttgaacgttgtttattcaactctggttgtgattggctacaagtcaaaaaccataaagga
agttgtagattttatgcacttcacagcgatgttccctgttgcagtaattttatgtggaat
gttctggggcttttacgtgtatgactccgacttggtaatgccagcttgggttgcagaaat
tgtcccctcgtggttgaaccatatcaaccatacctacttaatagtttttatacttctaga
cagttattaccataagagagatgctccaagcaactcgacatcatggatgatttcagttgt
ttatgtgacattttattttattatagttcttggagtgaaatactataatagaatgtgggt
ttacccagttcttcagtcattctccattgacctttttgtgatcagctatattctctctgt
tgttatattcttcatattgctcaaggctgcctgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTCCAGTACTCTGTGTCGTTTGG 297 451 273 Antisense
TGTCGTTTGGCTAGCTGCGTTATGC 24 559 288 Antisense
TTCACAGCGATGTTCCCTGTTGCAG 455 685 472 Antisense
GAATGTTCTGGGGCTTTTACGTGTA 307 331 509 Antisense
TTTACGTGTATGACTCCGACTTGGT 390 669 524 Antisense
TTGTCCCCTCGTGGTTGAACCATAT 55 687 572 Antisense
GAACCATATCAACCATACCTACTTA 707 345 588 Antisense
GAGATGCTCCAAGCAACTCGACATC 136 397 650 Antisense
CATTCTCCATTGACCTTTTTGTGAT 94 217 770 Antisense
TCAGCTATATTCTCTCTGTTGTTAT 282 625 794 Antisense
TTCATATTGCTCAAGGCTGCCTGCA 633 687 823 Antisense
Sequence Source Affymetrix Proprietary Database