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[193191_s_at] cyclophilin related protein

Description T27D1.1 /REP_DB=WormBase Gene ID /WP=CE03745 /GEN=cyp-9 /TR=SW:Q09637 /GB=CAA85495.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=cyclophilin related protein
Cluster 6grp_total > 87      4grp_total > 24      6grp_cgc > 58      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 36.6
(-0.9)
A 		20.3
(-3)
A 		67.4
(3)
A 		51.9
(1)
A 		47
B 48.7
(-2.3)
A 		42.1
(-3)
A 		96.5
(3)
A 		80.6
(1.2)
A 		54
C 27.8
(-3)
A 		72.1
(-0.8)
A 		63.4
(-1.2)
A 		148.9
(3)
A 		121
avr 37.7
(-3) 		44.8
(-2.2) 		75.8
(1.1) 		93.8
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 291
1 2 3 4 5 6 range
A 46.3
(-3)
A 		45.7
(-3)
A 		106.6
(-1)
P 		146.9
(0.4)
A 		177.5
(1.4)
P 		226
(3)
P 		180
B 44.6
(-3)
A 		60.8
(-2.6)
A 		81.4
(-2.1)
A 		81.5
(-2.1)
A 		157.1
(-0.3)
P 		293.9
(3)
P 		249
C 48.9
(-2.9)
A 		46
(-3)
A 		59.7
(-2.7)
A 		63.9
(-2.6)
A 		176.9
(-0.3)
P 		335.1
(3)
P 		289
avr 46.6
(-3) 		50.8
(-2.9) 		82.6
(-2.1) 		97.4
(-1.7) 		170.5
(0.1) 		285
(3) 		238
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 13.3
(1)
A 		4.4
(-3)
A 		17.6
(3)
A 		7.6
(-1.5)
A 		13
B 15.5
(-0.5)
A 		10.4
(-3)
A 		22.4
(3)
A 		17.2
(0.4)
A 		12
C 9.2
(-3)
A 		20.7
(1.3)
A 		22.1
(1.9)
A 		25.1
(3)
A 		16
avr 12.7
(-2.4) 		11.8
(-3) 		20.7
(3) 		16.6
(0.2) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 8.5
(-3)
A 		16.3
(-2)
A 		23.2
(-1.1)
P 		37.3
(0.7)
A 		53.6
(2.8)
P 		55
(3)
P 		47
B 15.5
(-3)
A 		20.3
(-2.7)
A 		19.8
(-2.7)
A 		21.6
(-2.6)
A 		63.8
(0.1)
P 		109.6
(3)
P 		94
C 18.1
(-2.7)
A 		14
(-2.9)
A 		15.2
(-2.9)
A 		12.9
(-3)
A 		57.2
(-0.3)
P 		112.2
(3)
P 		99
avr 14
(-3) 		16.9
(-2.8) 		19.4
(-2.6) 		23.9
(-2.2) 		58.2
(0.4) 		92.3
(3) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193191_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7698
Sequence Type Exemplar sequence
Representative Public ID T27D1.1 NCBI
Target Description T27D1.1 /REP_DB=WormBase Gene ID /WP=CE03745 /GEN=cyp-9 /TR=SW:Q09637 /GB=CAA85495.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=cyclophilin related protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065344(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065344 NCBI Caenorhabditis elegans CYclophyliN family member (cyn-9) (cyn-9) mRNA, complete cds. 11/11 None
GENEFINDER00000025881 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3694469:3699299:-1 11/11 None
T27D1.1 ENSEMBL cdna:known chromosome:CEL140:III:3697867:3699611:-1 gene:T27D1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3697873-3699611(-) 99.46 100.0
Public Domain and Genome References
Gene Title cyclophilin related protein
Gene Symbol cyn-9
Ensembl T27D1.1
Entrez Gene 175471 Entrez gene
SwissProt Q09637 EMBL-EBI
WormBase CE03745 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:251772_AT peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6457 protein folding inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3755 peptidyl-prolyl cis-trans isomerase activity inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88291 Hypothetical protein T27D1.1 [Caenorhabditis elegans] emb|CAA85495.1| Hypothetical protein T27D1.1 [Caenorhabditis elegans] ref|NP_497745.1| CYclophyliN family member (cyn-9) [Caenorhabditis elegans] sp|Q09637|CYP9_CAEEL Peptidyl-prolyl cis-trans isomerase 9 (PPIase) (Rotamase) (Cyclophilin-9) gb|AAC47131.1| cyclophilin isoform 9 gb|AAB94648.1| cyclophilin isoform 9 [Caenorhabditis elegans] 1.0E-147
blast CAA88291 Hypothetical protein T27D1.1 [Caenorhabditis elegans] emb|CAA85495.1| Hypothetical protein T27D1.1 [Caenorhabditis elegans] ref|NP_497745.1| CYclophyliN family member (cyn-9) [Caenorhabditis elegans] sp|Q09637|CYP9_CAEEL Peptidyl-prolyl cis-trans isomerase 9 (PPIase) (Rotamase) (Cyclophilin-9) gb|AAC47131.1| cyclophilin isoform 9 gb|AAB94648.1| cyclophilin isoform 9 [Caenorhabditis elegans] 1.0E-103
blast CAE64478 Hypothetical protein CBG09202 [Caenorhabditis briggsae] 3.0E-89
blast CAE64478 Hypothetical protein CBG09202 [Caenorhabditis briggsae] 4.0E-59
blast CAB40206 proline isomerase [Caenorhabditis briggsae] emb|CAB40202.1| proline isomerase [Caenorhabditis briggsae] 2.0E-58
blast AAK68283 Cyclophilin family protein 8, isoform b [Caenorhabditis elegans] ref|NP_509507.1| CYclophyliN family member (cyn-8) [Caenorhabditis elegans] 2.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR002130 EMBL-EBI Peptidyl-prolyl cis-trans isomerase, cyclophilin type 5.0E-89
Pfam IPR002130 EMBL-EBI Peptidyl-prolyl cis-trans isomerase, cyclophilin type 3.7E-52
Sequence
Target Sequence 
>C. ELEGANS:193191_S_AT
actcaaggccctatttgttgtcaatggccaataaaggaccaaattcaaattcttctcaat
ttttcatcacaacggctgcagctccacattgcaatggaaaacatgttgtttttggagagg
ttgtcaaaggacaaaacgttgtagattacatcgacaatcttgcggttgatgataaatcga
aaccactcgcaaaagttttgatctccaattgtggagaactcgtgaaaaagaagaaaccat
tgaagacagatgaagagctcgccgctgctctcgaagagaaaaataataacgcaagggaca
atgagatcccgaaatgcccgaaatcttggctctatcgtgatgatgacaatgagaagaagc
atgaaatgagaaatgataagagaagagagtatcgatcgagaagatcaagatctagatctc
atgagaagaatcgcgactataagaaagaaaatcgaggagattcttcgcgaagccaacctc
gcagagatgaaaacggaattactgtacgtgggcgtggaggagtacgcttccgacgcgaaa
gatctgcgactccggagcactggagaagaaatgcgccgacgaaatgggttcacgacagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCAAGGCCCTATTTGTTGTCAAT 535 99 314 Antisense
CAATTTTTCATCACAACGGCTGCAG 626 179 370 Antisense
GCTGCAGCTCCACATTGCAATGGAA 297 297 388 Antisense
GACAATGAGATCCCGAAATGCCCGA 546 359 610 Antisense
ATGCCCGAAATCTTGGCTCTATCGT 296 41 627 Antisense
AGGAGATTCTTCGCGAAGCCAACCT 71 57 768 Antisense
ACGGAATTACTGTACGTGGGCGTGG 333 93 806 Antisense
GGGCGTGGAGGAGTACGCTTCCGAC 206 493 823 Antisense
TACGCTTCCGACGCGAAAGATCTGC 497 647 836 Antisense
ATCTGCGACTCCGGAGCACTGGAGA 180 33 855 Antisense
GCCGACGAAATGGGTTCACGACAGC 129 285 888 Antisense
Sequence Source Affymetrix Proprietary Database