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[193180_at] 951004: R01E6.6 has homology with C36E8.2

Description R01E6.6 /REP_DB=WormBase Gene ID /WP=CE03523 /TR=Q21618 /GB=CAA92187.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=951004: R01E6.6 has homology with C36E8.2
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 19      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 90      6grp_total > 39      4grp_total > 23      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 233.1
(2.7)
P 		117.8
(-2.8)
P 		114.5
(-3)
P 		239.5
(3)
P 		125
B 236.3
(3)
P 		115.2
(-3)
P 		170.4
(-0.3)
P 		205.7
(1.5)
P 		121
C 274.2
(3)
P 		155.5
(-2.3)
P 		140.6
(-3)
P 		255.6
(2.2)
P 		134
avr 247.9
(3) 		129.5
(-3) 		141.8
(-2.4) 		233.6
(2.3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 217.6
(3)
P 		185.9
(0.3)
P 		149.7
(-2.8)
P 		204
(1.8)
P 		158.1
(-2.1)
P 		147.6
(-3)
P 		70
B 198.8
(0.8)
P 		173.5
(-0.8)
P 		138.8
(-3)
P 		138.5
(-3)
P 		232.9
(3)
P 		181.6
(-0.3)
P 		94
C 173.1
(-0.5)
P 		229
(3)
P 		132.4
(-3)
P 		186.6
(0.4)
P 		148.2
(-2)
P 		198.1
(1.1)
P 		97
avr 196.5
(3) 		196.1
(3) 		140.3
(-3) 		176.4
(0.9) 		179.7
(1.2) 		175.8
(0.8) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 84.9
(3)
P 		25.6
(-3)
P 		29.9
(-2.6)
P 		35.1
(-2)
P 		59
B 75.4
(3)
P 		28.5
(-3)
P 		39.5
(-1.6)
P 		43.8
(-1)
P 		47
C 90.8
(3)
P 		44.7
(-2.8)
P 		49
(-2.3)
P 		43.1
(-3)
P 		48
avr 83.7
(3) 		32.9
(-3) 		39.5
(-2.2) 		40.7
(-2.1) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 40.1
(-1.7)
P 		66.1
(3)
P 		32.6
(-3)
P 		51.7
(0.4)
P 		47.7
(-0.3)
P 		35.9
(-2.4)
P 		34
B 69.2
(0.5)
P 		57.8
(-0.6)
P 		33.7
(-3)
P 		36.7
(-2.7)
P 		94.6
(3)
P 		67.7
(0.3)
P 		61
C 64.2
(2.1)
P 		69.9
(3)
P 		33.7
(-3)
P 		37.5
(-2.4)
P 		47.9
(-0.6)
P 		66.3
(2.4)
P 		36
avr 57.8
(1.7) 		64.6
(3) 		33.3
(-3) 		42
(-1.3) 		63.4
(2.8) 		56.6
(1.5) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193180_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17406
Sequence Type Exemplar sequence
Representative Public ID R01E6.6 NCBI
Target Description R01E6.6 /REP_DB=WormBase Gene ID /WP=CE03523 /TR=Q21618 /GB=CAA92187.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=951004: R01E6.6 has homology with C36E8.2
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077866(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077866 NCBI Caenorhabditis elegans R01E6.6 (R01E6.6) mRNA, complete cds. 11/11 None
GENEFINDER00000031399 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13552473:13556075:-1 11/11 None
R01E6.6 ENSEMBL cdna:known chromosome:CEL140:X:13552473:13556075:-1 gene:R01E6.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031391 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13552472-13556075(-) 100.0 100.0
Public Domain and Genome References
Gene Title 951004: R01E6.6 has homology with C36E8.2
Ensembl R01E6.6
Entrez Gene 187506 Entrez gene
SwissProt Q21618 EMBL-EBI
WormBase CE03523 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92187 Hypothetical protein R01E6.6 [Caenorhabditis elegans] ref|NP_510267.1| R01E6.6 [Caenorhabditis elegans] 1.0E-150
blast CAE63124 Hypothetical protein CBG07422 [Caenorhabditis briggsae] 1.0E-143
blast CAA92187 Hypothetical protein R01E6.6 [Caenorhabditis elegans] ref|NP_510267.1| R01E6.6 [Caenorhabditis elegans] 1.0E-128
blast CAE63124 Hypothetical protein CBG07422 [Caenorhabditis briggsae] 1.0E-113
blast CAE60102 Hypothetical protein CBG03635 [Caenorhabditis briggsae] 3.0E-29
blast CAA84649 Hypothetical protein C36E8.2 [Caenorhabditis elegans] ref|NP_497802.2| C36E8.2 [Caenorhabditis elegans] 4.0E-29
Sequence
Target Sequence 
>C. ELEGANS:193180_AT
gtcgcacatattcacgatgccgatttcattgaaagcgtctcaaagcagtacggcgaagag
cacgtggaattaaaacagtacggttttaaacctgatttctgggttgctgtagcggatgcg
atgactctggaaggagtaattttagacatggctaatcatcagccagcggacacagtatcg
gcctggtcctcattagttacaatgattttctcatccgtccgtgacggatactattccgag
ctgcgacgtcatcgaatgagttcacggcgaacgctaaaacatcagagtacggtggattca
agggaggaaaataatgagcaaactcccggcgagatacactccgaagtgtgtctacatatt
ccactgagtccacatcacattccggcaaacgaaatggttctgacgctccttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGCACATATTCACGATGCCGATT 363 475 481 Antisense
GAAAGCGTCTCAAAGCAGTACGGCG 552 359 511 Antisense
CCTGATTTCTGGGTTGCTGTAGCGG 586 265 571 Antisense
GCTGTAGCGGATGCGATGACTCTGG 118 295 586 Antisense
CAGCCAGCGGACACAGTATCGGCCT 609 201 640 Antisense
GGCCTGGTCCTCATTAGTTACAATG 513 543 660 Antisense
TACAATGATTTTCTCATCCGTCCGT 315 641 678 Antisense
TATTCCGAGCTGCGACGTCATCGAA 446 665 712 Antisense
CTCCCGGCGAGATACACTCCGAAGT 78 235 803 Antisense
GTGTGTCTACATATTCCACTGAGTC 631 487 826 Antisense
AACGAAATGGTTCTGACGCTCCTTC 98 145 868 Antisense
Sequence Source Affymetrix Proprietary Database