[Home] | [Total List]

[193179_s_at] Zinc finger, C3HC4 type (RING finger)

Description ZK637.14 /REP_DB=WormBase Gene ID /WP=CE00432 /TR=SW:P30631 /GB=CAA77447.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 80      6grp_total > 07      4grp_total > 10      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 619
1 2 3 4 range
A 307.6
(-1.6)
P 		302.4
(-1.6)
P 		160.7
(-3)
P 		777.8
(3)
P 		617
B 218.2
(-3)
P 		289.2
(-2.2)
P 		271.7
(-2.4)
P 		779.6
(3)
P 		561
C 309.1
(-2.5)
P 		299.1
(-2.6)
P 		271.1
(-3)
P 		695
(3)
P 		424
avr 278.3
(-2.5) 		296.9
(-2.3) 		234.5
(-3) 		750.8
(3) 		516

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 293
1 2 3 4 5 6 range
A 372.4
(3)
P 		263.4
(0.3)
P 		214.4
(-0.9)
P 		195.4
(-1.3)
P 		127.1
(-3)
P 		134.8
(-2.8)
P 		245
B 420.3
(3)
P 		265.5
(-1.3)
P 		269.5
(-1.1)
P 		202.1
(-3)
P 		229.3
(-2.3)
P 		204
(-2.9)
P 		218
C 312.8
(3)
P 		234
(-0)
P 		229
(-0.2)
P 		240
(0.2)
P 		156.7
(-3)
P 		191.4
(-1.7)
P 		156
avr 368.5
(3) 		254.3
(-0.5) 		237.6
(-1) 		212.5
(-1.7) 		171
(-3) 		176.7
(-2.8) 		198
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 112
(2.8)
P 		65.6
(-1)
P 		42
(-3)
P 		113.9
(3)
P 		72
B 69.6
(-2.6)
P 		71.4
(-2.5)
P 		63
(-3)
P 		166.1
(3)
P 		103
C 102.3
(0.1)
P 		86
(-3)
P 		94.5
(-1.4)
P 		117.2
(3)
P 		31
avr 94.6
(-0.4) 		74.3
(-2.3) 		66.5
(-3) 		132.4
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 68.6
(0.5)
P 		93.7
(3)
P 		46.7
(-1.6)
P 		49.5
(-1.4)
P 		38.4
(-2.4)
P 		32.8
(-3)
P 		61
B 146.2
(3)
P 		88.4
(-0.7)
P 		65.4
(-2.2)
P 		53.5
(-3)
P 		93.2
(-0.4)
P 		76.1
(-1.5)
P 		93
C 115.9
(3)
P 		71.4
(-0.9)
P 		58.3
(-2.1)
P 		48.3
(-3)
P 		50.7
(-2.8)
P 		64.1
(-1.6)
P 		68
avr 110.2
(3) 		84.5
(0.4) 		56.8
(-2.4) 		50.4
(-3) 		60.8
(-2) 		57.7
(-2.3) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193179_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6312
Sequence Type Exemplar sequence
Representative Public ID ZK637.14 NCBI
Target Description ZK637.14 /REP_DB=WormBase Gene ID /WP=CE00432 /TR=SW:P30631 /GB=CAA77447.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066561(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066561 NCBI Caenorhabditis elegans ZK637.14 (ZK637.14) mRNA, complete cds. 11/11 None
SNAP00000013199 ENSEMBL cdna:SNAP chromosome:CEL140:III:8888318:8888839:-1 9/11 None
GENEFINDER00000013235 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8888318:8888945:-1 11/11 None
ZK637.14 ENSEMBL cdna:known chromosome:CEL140:III:8888271:8888955:-1 gene:ZK637.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8888313-8888941(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C3HC4 type (RING finger)
Ensembl ZK637.14
Entrez Gene 176251 Entrez gene
SwissProt P30631 EMBL-EBI
WormBase CE00432 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA77447 Hypothetical protein ZK637.14 [Caenorhabditis elegans] ref|NP_498962.1| ZK637.14 [Caenorhabditis elegans] sp|P30631|YOUD_CAEEL Hypothetical RING finger protein ZK637.14 in chromosome III 1.0E-81
blast CAA77447 Hypothetical protein ZK637.14 [Caenorhabditis elegans] ref|NP_498962.1| ZK637.14 [Caenorhabditis elegans] sp|P30631|YOUD_CAEEL Hypothetical RING finger protein ZK637.14 in chromosome III 2.0E-70
blast S15788 intermediate early protein IE110 homolog - Caenorhabditis elegans 2.0E-70
blast S15788 intermediate early protein IE110 homolog - Caenorhabditis elegans 3.0E-70
blast CAE57611 Hypothetical protein CBG00592 [Caenorhabditis briggsae] 5.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 4.1E-16
Pfam IPR001841 EMBL-EBI Zn-finger, RING 4.1E-16
Sequence
Target Sequence 
>C. ELEGANS:193179_S_AT
gacgctattagagctttttcgcatatgctcgaaaccatcttcgtcagaatgcgagcggaa
ggtactggttcacaaacagatgcgatgcaaagatggctggatttgtataatgttggaagt
ttgccaattgacaaaaaatcatataaagcgctgagactgatggatcgagagactacagat
caacagaaagaagatgcaacctgtgcaatttgtttggataacttgcaaaacaacgtcgat
attcctgaagatcatgtcatcaaagaggaattaaaaattgatccaacaacgttcggaacc
acagttatcgtcatgccatgcaaacatcgctttcattatttttgtctcactctatggctt
gaagctcaacaaacttgcccaacatgccgtcagaaggtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGCTATTAGAGCTTTTTCGCATA 522 379 25 Antisense
GCATATGCTCGAAACCATCTTCGTC 698 307 45 Antisense
GCGAGCGGAAGGTACTGGTTCACAA 640 289 75 Antisense
AAAGCGCTGAGACTGATGGATCGAG 224 125 169 Antisense
TGATCCAACAACGTTCGGAACCACA 441 559 303 Antisense
CGGAACCACAGTTATCGTCATGCCA 261 243 318 Antisense
CATGCCATGCAAACATCGCTTTCAT 91 211 336 Antisense
GCTTTCATTATTTTTGTCTCACTCT 297 305 353 Antisense
GTCTCACTCTATGGCTTGAAGCTCA 598 469 368 Antisense
GCTTGAAGCTCAACAAACTTGCCCA 397 307 381 Antisense
TTGCCCAACATGCCGTCAGAAGGTC 90 703 399 Antisense
Sequence Source Affymetrix Proprietary Database