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[193177_at] Lectin C-type domain short and long forms

Description C30H6.1 /REP_DB=WormBase Gene ID /WP=CE15645 /TR=O45276 /GB=CAB02810.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster 6grp_total > 33      4grp_total > 45      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 115
(3)
P 		114.7
(3)
P 		76
(-3)
P 		76.1
(-3)
A 		39
B 157.3
(3)
P 		156.4
(3)
P 		100.3
(0.1)
P 		39.9
(-3)
A 		117
C 141.6
(3)
P 		69.2
(-2.4)
P 		60.8
(-3)
P 		67.7
(-2.5)
A 		81
avr 138
(3) 		113.4
(1.1) 		79
(-1.6) 		61.2
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 80.5
(3)
P 		49.6
(-3)
P 		80.2
(2.9)
P 		62
(-0.6)
P 		64.7
(-0.1)
A 		79.5
(2.8)
P 		31
B 99
(1.5)
P 		83.7
(0.2)
P 		116.7
(3)
P 		51.6
(-2.5)
A 		46.7
(-2.9)
M 		45.7
(-3)
A 		71
C 94.2
(1.7)
P 		113
(3)
P 		106.7
(2.6)
P 		82.9
(0.9)
P 		25.4
(-3)
A 		40.9
(-1.9)
A 		88
avr 91.2
(1.9) 		82.1
(0.9) 		101.2
(3) 		65.5
(-0.9) 		45.6
(-3) 		55.4
(-1.9) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 41.9
(3)
P 		24.9
(-0.3)
P 		19.9
(-1.3)
P 		11.1
(-3)
A 		31
B 50.2
(3)
P 		38.6
(1.3)
P 		23.2
(-0.9)
P 		8.5
(-3)
A 		42
C 46.9
(3)
P 		19.9
(-1.6)
P 		21.2
(-1.3)
P 		11.4
(-3)
A 		36
avr 46.3
(3) 		27.8
(-0.1) 		21.4
(-1.2) 		10.3
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 14.8
(-3)
P 		17.6
(0.6)
P 		17.5
(0.4)
P 		15.7
(-1.9)
P 		19.5
(3)
A 		19.4
(2.9)
P 		5
B 34.5
(3)
P 		27.9
(1.1)
P 		28.4
(1.2)
P 		13.7
(-3)
A 		19
(-1.5)
M 		17
(-2)
A 		21
C 34.9
(3)
P 		34.5
(2.9)
P 		27.1
(1.2)
P 		16.7
(-1.1)
P 		8.2
(-3)
A 		13.7
(-1.8)
A 		27
avr 28.1
(3) 		26.7
(2.3) 		24.3
(1.2) 		15.4
(-3) 		15.6
(-2.9) 		16.7
(-2.4) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193177_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9180
Sequence Type Exemplar sequence
Representative Public ID C30H6.1 NCBI
Target Description C30H6.1 /REP_DB=WormBase Gene ID /WP=CE15645 /TR=O45276 /GB=CAB02810.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070692(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070692 NCBI Caenorhabditis elegans C30H6.1 (C30H6.1) mRNA, complete cds. 11/11 None
SNAP00000029644 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17352202:17354042:1 9/11 None
GENEFINDER00000029657 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17351895:17353031:1 11/11 None
C30H6.1 ENSEMBL cdna:known chromosome:CEL140:IV:17351895:17352891:1 gene:C30H6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17351900-17352897(+) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms
Ensembl C30H6.1
Entrez Gene 183064 Entrez gene
SwissProt O45276 EMBL-EBI
WormBase CE15645 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02810 Hypothetical protein C30H6.1 [Caenorhabditis elegans] ref|NP_503093.1| C30H6.1 [Caenorhabditis elegans] 1.0E-135
blast CAB02810 Hypothetical protein C30H6.1 [Caenorhabditis elegans] ref|NP_503093.1| C30H6.1 [Caenorhabditis elegans] 1.0E-125
blast CAB02810 Hypothetical protein C30H6.1 [Caenorhabditis elegans] ref|NP_503093.1| C30H6.1 [Caenorhabditis elegans] 4.0E-87
blast CAE57436 Hypothetical protein CBG00397 [Caenorhabditis briggsae] 2.0E-86
blast CAE57436 Hypothetical protein CBG00397 [Caenorhabditis briggsae] 3.0E-86
blast CAE57436 Hypothetical protein CBG00397 [Caenorhabditis briggsae] 8.0E-66
blast CAE57434 Hypothetical protein CBG00395 [Caenorhabditis briggsae] 2.0E-44
blast CAE57434 Hypothetical protein CBG00395 [Caenorhabditis briggsae] 3.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 2.8E-7
Sequence
Target Sequence 
>C. ELEGANS:193177_AT
aaaattgataaccttgtcgctcgtcaatatttattctcgaactttgttgcgaacaacaga
gaagctttgaaaaaatcggacggttctgatgaacgctggctatttaaatttatgaacgaa
aattctataattccaccaacttcaaactcaaaaagtggcagcctagcagactctggccag
gctggtcttgttcttgctgatgctattggaacagcaaaatgtgcatctggttggacgaga
tggactggaaatggatgttgctataaggaaatggcgtctccgatgctttcgtggtatgct
tcagaagattggtgttatagtcaaaaagctggagcacatttagcttcagttcatagcagg
gcagaagctgagtggctaaattaccaatataaactttggtggtctaaaatggacgattgg
atcgggttgagaagaaactgtgacaatacagcttgggcatggaccgatggcactccggtg
gatttcctctggtggcaaccgaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATTGATAACCTTGTCGCTCGTC 501 133 88 Antisense
GTCGCTCGTCAATATTTATTCTCGA 293 475 103 Antisense
GGACGGTTCTGATGAACGCTGGCTA 167 525 165 Antisense
TATAATTCCACCAACTTCAAACTCA 258 661 213 Antisense
AAGTGGCAGCCTAGCAGACTCTGGC 518 157 240 Antisense
GGTCTTGTTCTTGCTGATGCTATTG 400 503 271 Antisense
GTCTCCGATGCTTTCGTGGTATGCT 381 471 363 Antisense
GCTGGAGCACATTTAGCTTCAGTTC 616 293 415 Antisense
AATACAGCTTGGGCATGGACCGATG 287 171 532 Antisense
GACCGATGGCACTCCGGTGGATTTC 327 371 549 Antisense
GATTTCCTCTGGTGGCAACCGAATT 235 427 568 Antisense
Sequence Source Affymetrix Proprietary Database