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[193176_s_at]

Description M05B5.5 /REP_DB=WormBase Gene ID /WP=CE06191 /GEN=hlh-2 /TR=Q17588 /GB=CAA95837.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=transcription factor E2-A like
Cluster 6grp_high1_10_10 > 38      4grp_high_8_8 > 42      6grp_total > 37      4grp_total > 45      6grp_cgc > 16      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 207.6
(3)
P 		205.7
(2.9)
P 		108.3
(-1.8)
A 		84.5
(-3)
A 		123
B 211.6
(3)
P 		168.9
(0.4)
A 		114.4
(-3)
M 		120
(-2.7)
P 		97
C 258.1
(3)
P 		187.4
(-0.5)
P 		151.2
(-2.4)
P 		138.5
(-3)
P 		120
avr 225.8
(3) 		187.3
(0.9) 		124.6
(-2.4) 		114.3
(-3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 183
1 2 3 4 5 6 range
A 279.6
(3)
P 		229.7
(1.4)
P 		104.6
(-2.7)
P 		96.4
(-3)
A 		134.1
(-1.8)
P 		227.6
(1.3)
P 		183
B 240.2
(3)
P 		196.2
(1.1)
P 		99.6
(-3)
A 		119.1
(-2.2)
P 		106.8
(-2.7)
P 		201.8
(1.4)
P 		141
C 270.2
(3)
P 		199.2
(0.5)
P 		150.3
(-1.2)
P 		99.9
(-3)
A 		136.2
(-1.7)
M 		207.8
(0.8)
P 		170
avr 263.3
(3) 		208.4
(0.9) 		118.2
(-2.5) 		105.1
(-3) 		125.7
(-2.2) 		212.4
(1.1) 		158
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 75.6
(3)
P 		44.6
(0.1)
P 		28.3
(-1.5)
A 		12.4
(-3)
A 		63
B 67.5
(3)
P 		41.7
(-0.7)
A 		26.5
(-2.9)
M 		25.6
(-3)
P 		42
C 85.4
(3)
P 		53.9
(-0)
P 		52.7
(-0.2)
P 		23.3
(-3)
P 		62
avr 76.2
(3) 		46.7
(-0.2) 		35.8
(-1.3) 		20.4
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 51.6
(-0.1)
P 		81.7
(3)
P 		22.8
(-3)
P 		24.5
(-2.8)
A 		40.5
(-1.2)
P 		55.4
(0.3)
P 		59
B 83.6
(3)
P 		65.3
(1.2)
P 		24.2
(-3)
A 		31.5
(-2.3)
P 		43.4
(-1.1)
P 		75.2
(2.2)
P 		59
C 100.1
(3)
P 		60.8
(0.1)
P 		38.2
(-1.6)
P 		20.1
(-3)
A 		44.1
(-1.2)
M 		69.5
(0.7)
P 		80
avr 78.4
(3) 		69.3
(2) 		28.4
(-2.7) 		25.4
(-3) 		42.7
(-1) 		66.7
(1.7) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193176_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.411
Sequence Type Exemplar sequence
Representative Public ID M05B5.5 NCBI
Target Description M05B5.5 /REP_DB=WormBase Gene ID /WP=CE06191 /GEN=hlh-2 /TR=Q17588 /GB=CAA95837.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=transcription factor E2-A like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NR_002347(11), NM_001026410(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NR_002347 NCBI Caenorhabditis elegans hlh-2, miscRNA. 11/11 None
NM_001026410 NCBI Caenorhabditis elegans Helix Loop Helix family member (hlh-2) (hlh-2) mRNA, complete cds. 11/11 None
M05B5.5a.2 ENSEMBL cdna:known chromosome:CEL140:I:7198702:7202045:-1 gene:M05B5.5 11/11 None
M05B5.5a.1 ENSEMBL cdna:known chromosome:CEL140:I:7198979:7202043:-1 gene:M05B5.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008113 4/11 Cross Hyb Matching Probes None
GENEFINDER00000008128 5/11 Cross Hyb Matching Probes None
SNAP00000008114 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7199301-7201969(-) 100.0 100.0
Public Domain and Genome References
Ensembl M05B5.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95787 Hypothetical protein M05B5.5a [Caenorhabditis elegans] emb|CAA95837.1| Hypothetical protein M05B5.5a [Caenorhabditis elegans] ref|NP_001021581.1| Helix Loop Helix family member (hlh-2) [Caenorhabditis elegans] 0.0
blast AAC13874 transcription factor E12/47 homolog 0.0
blast AAA21347 basic-helix-loop-helix transcription factor E12/47 homolog 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001092 EMBL-EBI Basic helix-loop-helix dimerization domain bHLH 7.1E-11
Sequence
Target Sequence 
>C. ELEGANS:193176_S_AT
tggtgctgatccatcagttgccgacttctcatcgtatcagcagcaacttgctggacagcc
gaatggtcttggtggagataccaacttggttgactacaatcatcaattcccaccagccgg
tatgagcccacactttgatccaaatggatatccaggaatgaccggaatgccaccaggatc
aagtgcatcatctgttcgaaatgataagtctgcatcaagagcaacgagccgtcgtcgggt
acaaggccctccatcttctggaattccaactcgccattcatcgtcttcaaggctttctga
taatgaatcaatgagtgatgacaaagatacggataggagatcacagaataatgctcgaga
aagagtacgagttcgtgacatcaattcggcattcaaagagctcggacgaatgtgcacaca
gc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTGCTGATCCATCAGTTGCCGAC 317 553 585 Antisense
GACTTCTCATCGTATCAGCAGCAAC 651 371 607 Antisense
GCTGGACAGCCGAATGGTCTTGGTG 13 295 634 Antisense
TGACTACAATCATCAATTCCCACCA 528 571 675 Antisense
TATGAGCCCACACTTTGATCCAAAT 72 655 705 Antisense
GGATCAAGTGCATCATCTGTTCGAA 356 511 760 Antisense
GTCTGCATCAAGAGCAACGAGCCGT 589 469 792 Antisense
ATCTTCTGGAATTCCAACTCGCCAT 242 31 837 Antisense
CTCGCCATTCATCGTCTTCAAGGCT 433 231 854 Antisense
GAGTTCGTGACATCAATTCGGCATT 170 399 953 Antisense
GAGCTCGGACGAATGTGCACACAGC 639 387 982 Antisense
Sequence Source Affymetrix Proprietary Database