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[193175_at]

Description T01B10.4 /REP_DB=WormBase Gene ID /WP=CE21136 /GEN=nhr-14 /TR=SW:O02151 /GB=AAB52861.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=nuclear hormone receptor
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 41      6grp_total > 04      4grp_total > 54      6grp_highest_sub > De      6grp_cgc > 41      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 875
1 2 3 4 range
A 1316.5
(3)
P 		1024.9
(0.7)
P 		830.7
(-0.9)
P 		568.7
(-3)
P 		748
B 1381.9
(3)
P 		817
(-0.9)
P 		814.7
(-0.9)
P 		517.2
(-3)
P 		865
C 1230.1
(3)
P 		791.6
(-0.6)
P 		771.6
(-0.8)
P 		507.2
(-3)
P 		723
avr 1309.5
(3) 		877.8
(-0.3) 		805.7
(-0.9) 		531
(-3) 		779

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 600
1 2 3 4 5 6 range
A 990
(3)
P 		804.9
(0.9)
P 		539.5
(-2.1)
P 		606
(-1.3)
P 		705.8
(-0.2)
P 		454.9
(-3)
P 		535
B 796.8
(3)
P 		745.8
(2.2)
P 		635.7
(0.6)
P 		649.5
(0.8)
P 		587.3
(-0.1)
P 		389.6
(-3)
P 		407
C 832.5
(3)
P 		758.6
(1.9)
P 		763.3
(2)
P 		696.2
(1)
P 		623.1
(-0)
P 		419.5
(-3)
P 		413
avr 873.1
(3) 		769.8
(1.6) 		646.2
(-0) 		650.6
(0) 		638.7
(-0.1) 		421.3
(-3) 		452
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 396
1 2 3 4 range
A 479.3
(3)
P 		222.5
(-0.9)
P 		217.2
(-1)
P 		83.2
(-3)
P 		396
B 440.7
(3)
P 		201.8
(-1.3)
P 		188.8
(-1.6)
P 		110.2
(-3)
P 		331
C 407.2
(3)
P 		227.6
(-0.3)
P 		268.9
(0.4)
P 		85.5
(-3)
P 		322
avr 442.4
(3) 		217.3
(-0.9) 		225
(-0.7) 		93
(-3) 		349

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 182.5
(-0.5)
P 		286.2
(3)
P 		117.5
(-2.8)
P 		153.7
(-1.5)
P 		213
(0.5)
P 		110.8
(-3)
P 		175
B 277.2
(3)
P 		248.3
(1.7)
P 		154.4
(-2.6)
P 		172
(-1.8)
P 		238.6
(1.2)
P 		145.3
(-3)
P 		132
C 308.6
(3)
P 		231.5
(0.3)
P 		194.3
(-1.1)
P 		140
(-3)
P 		201.6
(-0.8)
P 		140.4
(-3)
P 		169
avr 256.1
(3) 		255.3
(3) 		155.4
(-1.9) 		155.2
(-1.9) 		217.7
(1.1) 		132.2
(-3) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193175_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16761
Sequence Type Exemplar sequence
Representative Public ID T01B10.4 NCBI
Target Description T01B10.4 /REP_DB=WormBase Gene ID /WP=CE21136 /GEN=nhr-14 /TR=SW:O02151 /GB=AAB52861.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=nuclear hormone receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171743(11), NM_171742(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171743 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-14) (nhr-14) mRNA, complete cds. 11/11 None
NM_171742 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-14) (nhr-14) mRNA, complete cds. 11/11 None
GENEFINDER00000012639 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8473849:8476113:-1 11/11 None
SNAP00000012633 ENSEMBL cdna:SNAP chromosome:CEL140:X:8474205:8476113:-1 11/11 None
T01B10.4b ENSEMBL cdna:known chromosome:CEL140:X:8473660:8476113:-1 gene:T01B10.4 11/11 None
T01B10.4a ENSEMBL cdna:known chromosome:CEL140:X:8473673:8476113:-1 gene:T01B10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8474192-8476218(-) 100.0 100.0
Public Domain and Genome References
Ensembl T01B10.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP13776 Nuclear hormone receptor family protein 14, isoform b [Caenorhabditis elegans] ref|NP_741861.2| Nuclear Hormone Receptor family member (nhr-14) [Caenorhabditis elegans] 0.0
blast AAP13775 Nuclear hormone receptor family protein 14, isoform a [Caenorhabditis elegans] ref|NP_741860.2| Nuclear Hormone Receptor family member (nhr-14) [Caenorhabditis elegans] sp|O02151|NHR14_CAEEL Nuclear hormone receptor family member nhr-14 0.0
blast H89591 protein T01B10.4 [imported] - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 9.9E-41
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 4.7E-50
Sequence
Target Sequence 
>C. ELEGANS:193175_AT
cttcgcatcctccagagttgttcgaggccctcacaagaattatcgatgagctgttgacac
ctctccgaagacttcgcacggatcacgcagaatttagctgtttgaaagctctgttgcttc
tcaatccagacgtggtcggaatttcaaataacacccgcgaacggatcagagaggcccgtg
atgcattgctcaaaaccctcttcgcctacatgagcaacacacaaaactctattgatgcat
cacttcgtgtttcctcacttctcatgattatcccatctctgatctcggtcagctcttcaa
ttatggaatttccagcgctcagtgatcttttcgggcttggagatgttatcaagagagaca
caattagtcctaaaattgagactccacctctcgagatgaaaccaatgatgccgaaaattg
cacaacctccagtgacatctgctccaactgttcctacaaatatcatgatgaacaaggatt
taatatcacagatcatgaacaacccacaattgttccctctcctcccaatgccacagacag
cttcacctccaatgagcttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCGCATCCTCCAGAGTTGTTCGA 101 221 743 Antisense
ATCGATGAGCTGTTGACACCTCTCC 159 35 784 Antisense
GCTTCTCAATCCAGACGTGGTCGGA 550 303 858 Antisense
CAGAGAGGCCCGTGATGCATTGCTC 130 207 909 Antisense
TCTTCGCCTACATGAGCAACACACA 645 617 941 Antisense
TGATGCATCACTTCGTGTTTCCTCA 149 567 975 Antisense
TCCTCACTTCTCATGATTATCCCAT 393 593 994 Antisense
AGCGCTCAGTGATCTTTTCGGGCTT 94 83 1056 Antisense
AGACTCCACCTCTCGAGATGAAACC 6 71 1121 Antisense
ATTGCACAACCTCCAGTGACATCTG 551 5 1159 Antisense
ACAGCTTCACCTCCAATGAGCTTTA 701 107 1279 Antisense
Sequence Source Affymetrix Proprietary Database