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[193174_at] fatty acid-binding protein

Description F40F4.3 /REP_DB=WormBase Gene ID /WP=CE04533 /GEN=lbp-1 /TR=SW:Q20223 /GB=AAA81434.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=fatty acid-binding protein
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 53      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 34      6grp_total > 54      4grp_total > 21      6grp_cgc > 55      6grp_high1_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1558
1 2 3 4 range
A 1966.1
(0.9)
P 		1421.6
(-1.3)
P 		991.1
(-3)
P 		2479.3
(3)
P 		1488
B 2157.9
(1.9)
P 		1177.6
(-2.5)
P 		1063.9
(-3)
P 		2402.9
(3)
P 		1339
C 2145.4
(2.3)
P 		1262.5
(-1.5)
P 		921.4
(-3)
P 		2298.7
(3)
P 		1377
avr 2089.8
(1.7) 		1287.2
(-1.7) 		992.1
(-3) 		2393.6
(3) 		1402

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2624
1 2 3 4 5 6 range
A 1994.7
(-3)
P 		2866.3
(-0.4)
P 		4025
(3)
P 		2560.2
(-1.3)
P 		2097.8
(-2.7)
P 		2414.4
(-1.8)
P 		2030
B 1783.7
(-3)
P 		3496.1
(0.9)
P 		4407.8
(3)
P 		2057.2
(-2.4)
P 		2114.7
(-2.2)
P 		2687.1
(-0.9)
P 		2624
C 1822.5
(-3)
P 		3509.2
(3)
P 		3018.9
(1.3)
P 		2898.6
(0.8)
P 		2108.7
(-2)
P 		2804.6
(0.5)
P 		1687
avr 1867
(-3) 		3290.5
(1.4) 		3817.2
(3) 		2505.3
(-1) 		2107.1
(-2.3) 		2635.4
(-0.6) 		1950
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 469
1 2 3 4 range
A 715.9
(3)
P 		308.6
(-2.3)
P 		259.1
(-3)
P 		362.9
(-1.6)
P 		457
B 688.1
(3)
P 		290.8
(-2.4)
P 		246.5
(-3)
P 		512.1
(0.6)
P 		442
C 710.2
(3)
P 		363
(-2.4)
P 		321.2
(-3)
P 		387.6
(-2)
P 		389
avr 704.7
(3) 		320.8
(-2.4) 		275.6
(-3) 		420.9
(-1) 		429

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 796
1 2 3 4 5 6 range
A 367.7
(-3)
P 		1019.4
(3)
P 		876.6
(1.7)
P 		649.3
(-0.4)
P 		633
(-0.6)
P 		587.8
(-1)
P 		652
B 620.6
(-2.3)
P 		1163.7
(3)
P 		1070.3
(2.1)
P 		544.9
(-3)
P 		859.2
(0)
P 		1002
(1.4)
P 		619
C 675.5
(-1.9)
P 		1070.8
(3)
P 		768.4
(-0.7)
P 		582.9
(-3)
P 		682.4
(-1.8)
P 		938.9
(1.4)
P 		488
avr 554.6
(-3) 		1084.6
(3) 		905.1
(1) 		592.4
(-2.6) 		724.9
(-1.1) 		842.9
(0.3) 		530
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193174_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18468
Sequence Type Exemplar sequence
Representative Public ID F40F4.3 NCBI
Target Description F40F4.3 /REP_DB=WormBase Gene ID /WP=CE04533 /GEN=lbp-1 /TR=SW:Q20223 /GB=AAA81434.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=fatty acid-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076156(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076156 NCBI Caenorhabditis elegans Lipid Binding Protein family member (lbp-1) (lbp-1) mRNA, complete cds. 11/11 None
SNAP00000025267 ENSEMBL cdna:SNAP chromosome:CEL140:X:3259147:3259742:1 11/11 None
GENEFINDER00000025275 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3259147:3259742:1 11/11 None
F40F4.3 ENSEMBL cdna:known chromosome:CEL140:X:3259111:3259843:1 gene:F40F4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3259147-3259743(+) 100.0 100.0
Public Domain and Genome References
Gene Title fatty acid-binding protein
Gene Symbol lbp-1
Ensembl F40F4.3
Entrez Gene 180616 Entrez gene
SwissProt Q20223 EMBL-EBI
WormBase CE04533 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5488 binding inferred from electronic annotation QuickGO AmiGO
8289 lipid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81434 Lipid binding protein protein 1 [Caenorhabditis elegans] ref|NP_508557.1| Lipid Binding Protein family member (lbp-1) [Caenorhabditis elegans] sp|Q20223|FABP1_CAEEL Fatty acid-binding protein homolog 1 precursor (Lipid binding protein 1) 3.0E-71
blast CAE68399 Hypothetical protein CBG14168 [Caenorhabditis briggsae] 8.0E-64
blast AAA81435 Lipid binding protein protein 2 [Caenorhabditis elegans] ref|NP_508558.1| Lipid Binding Protein family member (lbp-2) [Caenorhabditis elegans] sp|Q20224|FABP2_CAEEL Fatty acid-binding protein homolog 2 precursor (Lipid binding protein 2) 2.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR000566 EMBL-EBI Lipocalin-related protein and Bos/Can/Equ allergen 2.9E-4
Sequence
Target Sequence 
>C. ELEGANS:193174_AT
atgtgcgctaaaatcgctcttctcctggttcttgttggagctgcttcagctgctgttctc
cctgataagttctatggaacttttgacttggaccattccgaaaattttgatgagtatctc
actgctaaaggatacggatggttcactcgtaaacttgtcacttttgccacattcaaaaag
gtgttcactaagacttccaacaagaacctctttgactactccaacttgacatcaaagaaa
gacgtccattacaagaatgtccaacttggaaaagccttccagggagaaggacttgacagc
accaaacacgagatcactttcaccctcaaggacggacatttgtttgagcatcacaagcca
ctcgagggaggagacgccaaggaagagacctacgagtaccttttcgataaggaattcctt
cttgtgcgcatgagttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGCGCTAAAATCGCTCTTCTCC 465 49 13 Antisense
GGTTCTTGTTGGAGCTGCTTCAGCT 217 507 39 Antisense
TGCTGTTCTCCCTGATAAGTTCTAT 505 581 63 Antisense
GAACTTTTGACTTGGACCATTCCGA 224 349 89 Antisense
GATGGTTCACTCGTAAACTTGTCAC 256 407 149 Antisense
AACTTGTCACTTTTGCCACATTCAA 335 139 164 Antisense
AACAAGAACCTCTTTGACTACTCCA 195 135 211 Antisense
CAAACACGAGATCACTTTCACCCTC 349 191 315 Antisense
ACTTTCACCCTCAAGGACGGACATT 683 101 328 Antisense
GCATCACAAGCCACTCGAGGGAGGA 232 303 360 Antisense
AATTCCTTCTTGTGCGCATGAGTTT 467 177 425 Antisense
Sequence Source Affymetrix Proprietary Database