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[193172_at] Lectin C-type domain short and long forms

Description ZK666.5 /REP_DB=WormBase Gene ID /WP=CE02390 /TR=Q23563 /GB=CAA88984.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster 6grp_total > 93      4grp_total > 51      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 8.5
(-2.3)
A 		50.4
(3)
A 		20
(-0.8)
A 		2.7
(-3)
A 		48
B 45.2
(2.5)
A 		19.2
(-1.8)
A 		48.4
(3)
A 		11.6
(-3)
A 		37
C 16.9
(-1.4)
A 		41.4
(3)
A 		19.4
(-0.9)
A 		7.9
(-3)
A 		34
avr 23.5
(0.3) 		37
(3) 		29.3
(1.4) 		7.4
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 451
1 2 3 4 5 6 range
A 33.4
(-2.7)
A 		30
(-2.8)
A 		13.8
(-3)
A 		136
(-1.2)
A 		428
(3)
P 		42.2
(-2.6)
A 		414
B 15.5
(-2.9)
A 		7.5
(-3)
A 		40
(-2.6)
A 		109.4
(-1.6)
P 		455.4
(3)
P 		33.1
(-2.7)
A 		448
C 23.2
(-2.6)
A 		30.4
(-2.5)
A 		4.9
(-3)
A 		152
(-0.2)
P 		314.8
(3)
P 		36.8
(-2.4)
A 		310
avr 24
(-2.9) 		22.6
(-3) 		19.6
(-3) 		132.5
(-1.2) 		399.4
(3) 		37.4
(-2.7) 		380
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.1
(-1.5)
A 		10.9
(3)
A 		5.2
(-0.3)
A 		0.4
(-3)
A 		11
B 14.4
(3)
A 		4.7
(-1.9)
A 		11.2
(1.4)
A 		2.5
(-3)
A 		12
C 5.6
(-0.6)
A 		11.9
(3)
A 		6.7
(0.1)
A 		1.3
(-3)
A 		11
avr 7.7
(1.8) 		9.2
(3) 		7.7
(1.8) 		1.4
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 6.2
(-2.8)
A 		10.7
(-2.6)
A 		3
(-3)
A 		34.5
(-1.5)
A 		129.1
(3)
P 		10.3
(-2.7)
A 		126
B 5.4
(-2.9)
A 		2.5
(-3)
A 		9.7
(-2.8)
A 		29
(-2.1)
P 		185
(3)
P 		12.4
(-2.7)
A 		183
C 8.6
(-2.6)
A 		9.3
(-2.5)
A 		1.3
(-3)
A 		30.6
(-1.3)
P 		101.9
(3)
P 		12.3
(-2.3)
A 		101
avr 6.7
(-2.9) 		7.5
(-2.9) 		4.7
(-3) 		31.4
(-1.8) 		138.7
(3) 		11.7
(-2.7) 		134
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193172_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3665
Sequence Type Exemplar sequence
Representative Public ID ZK666.5 NCBI
Target Description ZK666.5 /REP_DB=WormBase Gene ID /WP=CE02390 /TR=Q23563 /GB=CAA88984.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063857(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063857 NCBI Caenorhabditis elegans ZK666.5 (ZK666.5) mRNA, complete cds. 11/11 None
SNAP00000005236 ENSEMBL cdna:SNAP chromosome:CEL140:II:10477932:10479358:-1 11/11 None
GENEFINDER00000005252 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10477932:10479358:-1 11/11 None
ZK666.5 ENSEMBL cdna:known chromosome:CEL140:II:10477932:10479358:-1 gene:ZK666.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10477928-10479355(-) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms
Ensembl ZK666.5
Entrez Gene 191383 Entrez gene
SwissProt Q23563 EMBL-EBI
WormBase CE02390 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88984 Hypothetical protein ZK666.5 [Caenorhabditis elegans] ref|NP_496258.1| ZK666.5 [Caenorhabditis elegans] 0.0
blast CAA88985 Hypothetical protein ZK666.6 [Caenorhabditis elegans] ref|NP_496259.1| ZK666.6 [Caenorhabditis elegans] 1.0E-133
blast CAE59673 Hypothetical protein CBG03095 [Caenorhabditis briggsae] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 5.8E-23
Sequence
Target Sequence 
>C. ELEGANS:193172_AT
ttgcaactccttatcacaatctctcgaatgaaaatttgaatgttatcggagaaattcaag
gatttttacttcaagcaaattgcttctgtccaacttcttggattcaataccgtgctttgc
atgatgacgtggattcttaccgttacggaatctgcattcttccagttggattgactgccg
tctggcgtgctgctcaattatcatgccgtaatagatggagaaattcatatcttctcaatg
aatatgacaacaggaaacacaattttgttatatcatctgtcaaaaacttctctggtttcc
attttccattaagctatcacatcggactgaacaaggtcaatggaatgtggcagtgggatc
agccacaagattggacacaaccacaacttcagaactatgaaatctggaattcaggatatc
caatatctgattcctcgttgacaactgttttgaatcgacagacaactgttgatttggaaa
ttggatggcaaaacgttcatcaattcgcagctgcctccaactatgtatgtgaaactgctg
cttgtgacactaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCAACTCCTTATCACAATCTCTC 512 703 608 Antisense
CAAATTGCTTCTGTCCAACTTCTTG 74 193 683 Antisense
GGATTCAATACCGTGCTTTGCATGA 331 509 707 Antisense
GATGACGTGGATTCTTACCGTTACG 65 411 730 Antisense
GCGTGCTGCTCAATTATCATGCCGT 179 293 792 Antisense
GGTTTCCATTTTCCATTAAGCTATC 205 505 901 Antisense
GGACACAACCACAACTTCAGAACTA 178 527 980 Antisense
ATATCTGATTCCTCGTTGACAACTG 110 21 1030 Antisense
AAAACGTTCATCAATTCGCAGCTGC 563 131 1097 Antisense
CAGCTGCCTCCAACTATGTATGTGA 597 203 1115 Antisense
GAAACTGCTGCTTGTGACACTAATA 371 357 1138 Antisense
Sequence Source Affymetrix Proprietary Database