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[193171_at] acetylglucosaminyltransferase-like domain

Description R07B7.6 /REP_DB=WormBase Gene ID /WP=CE06268 /TR=Q21796 /GB=CAB00115.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=acetylglucosaminyltransferase-like domain
Cluster 6grp_high1_10_10 > 53      4grp_high_8_8 > 05      6grp_total > 63      4grp_total > 04      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 333
1 2 3 4 range
A 101.8
(-3)
P 		125.2
(-2.2)
P 		117.6
(-2.5)
P 		284.1
(3)
P 		182
B 141.8
(-1.4)
P 		80.1
(-2.5)
P 		50.6
(-3)
M 		383.3
(3)
P 		333
C 149.6
(-0.1)
P 		50.3
(-3)
P 		108.4
(-1.3)
P 		253.9
(3)
P 		204
avr 131.1
(-1.8) 		85.2
(-3) 		92.2
(-2.8) 		307.1
(3) 		222

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 62.5
(-2.8)
P 		132.1
(1.3)
P 		160
(3)
P 		147.2
(2.2)
P 		136.2
(1.6)
P 		58.9
(-3)
P 		101
B 53.4
(-3)
P 		177.1
(0.9)
P 		243.1
(3)
P 		101.6
(-1.5)
P 		89.8
(-1.8)
P 		178.2
(0.9)
P 		190
C 95.3
(-0.9)
P 		151.4
(3)
P 		64.6
(-3)
A 		116.2
(0.6)
P 		71.5
(-2.5)
P 		114.1
(0.4)
P 		87
avr 70.4
(-3) 		153.5
(2.8) 		155.9
(3) 		121.7
(0.6) 		99.2
(-1) 		117.1
(0.3) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 37.1
(1.1)
P 		27.2
(-3)
P 		30.8
(-1.5)
P 		41.6
(3)
P 		14
B 45.2
(-0.1)
P 		19.8
(-2.3)
P 		11.7
(-3)
M 		81.7
(3)
P 		70
C 49.5
(3)
P 		14.5
(-3)
P 		37.8
(1)
P 		42.8
(1.9)
P 		35
avr 43.9
(1) 		20.5
(-3) 		26.8
(-1.9) 		55.4
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 11.5
(-3)
P 		47
(3)
P 		34.8
(0.9)
P 		37.3
(1.4)
P 		41.1
(2)
P 		14.3
(-2.5)
P 		36
B 18.6
(-3)
P 		59
(2.1)
P 		59
(2.1)
P 		26.9
(-2)
P 		36.5
(-0.8)
P 		66.5
(3)
P 		48
C 35.3
(0.8)
P 		46.2
(3)
P 		16.4
(-3)
A 		23.4
(-1.6)
P 		23.2
(-1.6)
P 		38.2
(1.4)
P 		30
avr 21.8
(-3) 		50.7
(3) 		36.7
(0.1) 		29.2
(-1.5) 		33.6
(-0.6) 		39.7
(0.7) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193171_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14716
Sequence Type Exemplar sequence
Representative Public ID R07B7.6 NCBI
Target Description R07B7.6 /REP_DB=WormBase Gene ID /WP=CE06268 /TR=Q21796 /GB=CAB00115.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=acetylglucosaminyltransferase-like domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073626
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
R07B7.6 ENSEMBL cdna:known chromosome:CEL140:V:12075465:12077574:-1 gene:R07B7.6 None
SNAP00000027088 ENSEMBL cdna:SNAP chromosome:CEL140:V:12075576:12077572:-1 None
NM_073626 NCBI Caenorhabditis elegans R07B7.6 (R07B7.6) mRNA, complete cds. None
GENEFINDER00000027101 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12075576:12077572:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12075575-12077638(-) 100.0 100.0
Public Domain and Genome References
Gene Title acetylglucosaminyltransferase-like domain
Ensembl R07B7.6
Entrez Gene 179658 Entrez gene
SwissProt Q21796 EMBL-EBI
WormBase CE37399 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8375 acetylglucosaminyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB00115 Hypothetical protein R07B7.6 [Caenorhabditis elegans] ref|NP_506027.2| R07B7.6 [Caenorhabditis elegans] 0.0
blast CAE75383 Hypothetical protein CBG23370 [Caenorhabditis briggsae] 0.0
blast CAE75382 Hypothetical protein CBG23369 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 6.1E-97
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506027.2 1 30-52
R07B7.6 1 30-52
SNAP00000027088 1 30-52
GENEFINDER00000027101 1 30-52
Sequence
Target Sequence 
>C. ELEGANS:193171_AT
gcttaaacgaagtcattgtctcaaaagtctttgtgaaatcaatgttcgaaaaattgaata
tggatataatcatcaaactatttgatgataacgattactatggagttgacgagatgcttg
ttcaaacactttatgaaaactatcttggtttggaaggacaaatggaatcaaattgtacta
gaaatcacaatgatattctgacaagaatgacgcattgggattttagtggtcctaatggat
ttgacaaggaatgtcattcgaaatggaaacggcatggaatttgcattatgggtgttgaat
acatgaatgaactaattaaaagtcaacaagtcatagcaaacaaagttatggcaactttcg
atttcggaactattgcttgcatgcgtgagatgataaaaagaaatactgcaggggaaacgc
caaatacccaatggttaacttcttttccgcaggtaaatctttgctggaaaaatggaacag
gaaataggtgtttctttcagtttcgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTAAACGAAGTCATTGTCTCAAA 359 305 923 Antisense
TGACGAGATGCTTGTTCAAACACTT 651 569 1029 Antisense
GACGCATTGGGATTTTAGTGGTCCT 329 381 1131 Antisense
TAGTGGTCCTAATGGATTTGACAAG 268 553 1146 Antisense
ACGGCATGGAATTTGCATTATGGGT 54 97 1191 Antisense
GTTATGGCAACTTTCGATTTCGGAA 440 447 1267 Antisense
GAACTATTGCTTGCATGCGTGAGAT 1 351 1289 Antisense
TACTGCAGGGGAAACGCCAAATACC 6 647 1326 Antisense
CAATGGTTAACTTCTTTTCCGCAGG 690 181 1351 Antisense
TTTCCGCAGGTAAATCTTTGCTGGA 679 669 1366 Antisense
AATAGGTGTTTCTTTCAGTTTCGAG 491 171 1405 Antisense
Sequence Source Affymetrix Proprietary Database