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[193169_at] Lectin C-type domain short and long forms

Description F49H6.1 /REP_DB=WormBase Gene ID /WP=CE18711 /TR=Q9XUZ8 /GB=CAB04446.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster 6grp_total > 43      4grp_total > 06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 3.9
(-2.5)
A 		9
(-0.5)
A 		2.7
(-3)
A 		17.7
(3)
A 		15
B 17.7
(3)
A 		3.3
(-3)
A 		15.8
(2.2)
A 		5.3
(-2.2)
A 		14
C 4.9
(-0.4)
A 		3.3
(-2.1)
A 		2.5
(-3)
A 		8.1
(3)
A 		6
avr 8.8
(1.2) 		5.2
(-3) 		7
(-0.9) 		10.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 5.2
(3)
A 		2
(-2.3)
A 		3.6
(0.3)
A 		1.6
(-3)
A 		4.9
(2.5)
A 		2.8
(-1)
A 		4
B 7.1
(1.7)
A 		3
(-2.7)
A 		8.3
(3)
A 		2.7
(-3)
A 		2.7
(-3)
A 		2.9
(-2.8)
A 		6
C 1.8
(-3)
A 		3
(0.4)
A 		3.1
(0.7)
A 		3.9
(3)
A 		2
(-2.4)
A 		3.2
(1)
A 		2
avr 4.7
(2.2) 		2.7
(-3) 		5
(3) 		2.7
(-3) 		3.2
(-1.7) 		3
(-2.2) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.4
(-0.8)
A 		2
(1.1)
A 		0.7
(-3)
A 		2.6
(3)
A 		2
B 5.7
(3)
A 		0.8
(-3)
A 		3.7
(0.6)
A 		1.1
(-2.6)
A 		5
C 1.6
(3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		1.4
(1.3)
A 		1
avr 2.9
(3) 		1.2
(-3) 		1.8
(-0.9) 		1.7
(-1.2) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1
(0.3)
A 		0.7
(-1.4)
A 		0.8
(-0.8)
A 		0.4
(-3)
A 		1.5
(3)
A 		0.7
(-1.4)
A 		1
B 2.5
(3)
A 		1
(-2)
A 		2
(1.3)
A 		0.7
(-3)
A 		1.1
(-1.7)
A 		1.1
(-1.7)
A 		2
C 0.7
(-3)
A 		0.9
(0)
A 		0.8
(-1.5)
A 		0.8
(-1.5)
A 		0.7
(-3)
A 		1.1
(3)
A 		0
avr 1.4
(3) 		0.9
(-0.8) 		1.2
(1.5) 		0.6
(-3) 		1.1
(0.8) 		1
(0) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193169_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14488
Sequence Type Exemplar sequence
Representative Public ID F49H6.1 NCBI
Target Description F49H6.1 /REP_DB=WormBase Gene ID /WP=CE18711 /TR=Q9XUZ8 /GB=CAB04446.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074904(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074904 NCBI Caenorhabditis elegans F49H6.1 (F49H6.1) mRNA, complete cds. 11/11 None
SNAP00000000001 ENSEMBL cdna:SNAP chromosome:CEL140:V:17012956:17014333:1 11/11 None
GENEFINDER00000000020 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17012592:17014427:1 9/11 None
F49H6.1 ENSEMBL cdna:known chromosome:CEL140:V:17012956:17014427:1 gene:F49H6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17012955-17014427(+) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms
Ensembl F49H6.1
Entrez Gene 186069 Entrez gene
SwissProt Q9XUZ8 EMBL-EBI
WormBase CE18711 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04446 Hypothetical protein F49H6.1 [Caenorhabditis elegans] ref|NP_507305.1| F49H6.1 [Caenorhabditis elegans] 1.0E-104
blast CAB04446 Hypothetical protein F49H6.1 [Caenorhabditis elegans] ref|NP_507305.1| F49H6.1 [Caenorhabditis elegans] 3.0E-93
blast CAB04446 Hypothetical protein F49H6.1 [Caenorhabditis elegans] ref|NP_507305.1| F49H6.1 [Caenorhabditis elegans] 4.0E-75
blast CAB04438 Hypothetical protein F49H6.2 [Caenorhabditis elegans] ref|NP_507306.1| F49H6.2 [Caenorhabditis elegans] 6.0E-55
blast CAB04868 Hypothetical protein T27C5.7 [Caenorhabditis elegans] ref|NP_507406.2| T27C5.7 [Caenorhabditis elegans] 5.0E-52
blast CAB04438 Hypothetical protein F49H6.2 [Caenorhabditis elegans] ref|NP_507306.1| F49H6.2 [Caenorhabditis elegans] 2.0E-51
blast CAA20953 Hypothetical protein Y102A5C.7 [Caenorhabditis elegans] ref|NP_507279.1| Y102A5C.7 [Caenorhabditis elegans] 1.0E-43
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000000020 1 15-37
Sequence
Target Sequence 
>C. ELEGANS:193169_AT
atgtcggtttctattttccttgtgttaacttttagttctgcttttgttaattcttgcatt
ccaactcaacaagtagaaataccgtgcccgactgactgggaagaatttgtgagacctagt
ggaacatggtgcatcagagtatttatgggtattggagatcagccaactgcggctggcctg
tgtggtggtgagggagcagtccttacctcgattcagagtcaggaagagctggactttatg
agaagctcgtataataccgtggtcggtacacttggatttttctggattgggggtcagagg
acaggcgcgtgcatatcatcaggattgactgcgacatgtaccgcactgaattcgttttca
tggacagatggttccgcgacaggcactgctggatttgtctggaatacaggacaacccgac
aacggaggggctatgcttaacgaaccttgcgtcactgtgaactaccttggtgtcttatcc
gatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCGGTTTCTATTTTCCTTGTGT 431 45 13 Antisense
ACAAGTAGAAATACCGTGCCCGACT 157 113 81 Antisense
GAAGCTCGTATAATACCGTGGTCGG 248 343 254 Antisense
GGTCGGTACACTTGGATTTTTCTGG 88 501 273 Antisense
AGAGGACAGGCGCGTGCATATCATC 672 65 308 Antisense
GACATGTACCGCACTGAATTCGTTT 706 369 345 Antisense
CATGGACAGATGGTTCCGCGACAGG 566 209 371 Antisense
GGAATACAGGACAACCCGACAACGG 398 531 413 Antisense
GGGGCTATGCTTAACGAACCTTGCG 188 499 439 Antisense
GAACCTTGCGTCACTGTGAACTACC 122 347 454 Antisense
AACTACCTTGGTGTCTTATCCGATG 215 139 472 Antisense
Sequence Source Affymetrix Proprietary Database