[Home] | [Total List]

[193166_at] Inhibitor of Apoptosis domain.

Description T27F2.3 /REP_DB=WormBase Gene ID /WP=CE06521 /GEN=bir-1 /TR=Q22837 /GB=CAA98553.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Inhibitor of Apoptosis domain.
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 66      4grp_highest_8_8 > 47      4grp_high_8_8 > 20      6grp_highest_nonorm > 87      6grp_total > 57      4grp_total > 20      6grp_highest_sub > Cu      6grp_cgc > 38      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 991
1 2 3 4 range
A 979
(-1.8)
P 		980.6
(-1.8)
P 		783.7
(-3)
P 		1775
(3)
P 		991
B 1090.5
(2.9)
P 		1021.5
(1.4)
P 		821
(-3)
P 		1096.3
(3)
P 		275
C 1133
(2.5)
P 		1032.8
(0.5)
P 		853.9
(-3)
P 		1159.5
(3)
P 		306
avr 1067.5
(-0.2) 		1011.6
(-0.8) 		819.5
(-3) 		1343.6
(3) 		524

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 741
1 2 3 4 5 6 range
A 1246.5
(2.1)
P 		1026.1
(-0.6)
P 		1147.5
(0.9)
P 		1067.5
(-0.1)
P 		829.5
(-3)
P 		1320.2
(3)
P 		491
B 1134.4
(0.3)
P 		923
(-2.7)
P 		1136.8
(0.4)
P 		901.6
(-3)
P 		986.6
(-1.8)
P 		1322.2
(3)
P 		421
C 971.3
(-2.2)
P 		884
(-3)
P 		888.1
(-3)
P 		904.5
(-2.8)
P 		985.7
(-2.1)
P 		1570.2
(3)
P 		686
avr 1117.4
(-0.7) 		944.4
(-2.9) 		1057.5
(-1.4) 		957.9
(-2.7) 		933.9
(-3) 		1404.2
(3) 		470
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 356.5
(3)
P 		212.9
(-2.7)
P 		204.9
(-3)
P 		259.8
(-0.8)
P 		152
B 347.7
(3)
P 		252.3
(-0.6)
P 		190.3
(-3)
P 		233.6
(-1.3)
P 		157
C 375.1
(3)
P 		296.9
(0.4)
P 		297.6
(0.4)
P 		195.5
(-3)
P 		180
avr 359.8
(3) 		254
(-1.9) 		230.9
(-2.9) 		229.6
(-3) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 344
1 2 3 4 5 6 range
A 229.8
(-3)
P 		364.9
(3)
P 		249.9
(-2.1)
P 		270.7
(-1.2)
P 		250.3
(-2.1)
P 		321.4
(1.1)
P 		135
B 394.7
(0.7)
P 		307.2
(-1.4)
P 		276.1
(-2.1)
P 		238.8
(-3)
P 		400.8
(0.8)
P 		493
(3)
P 		254
C 360
(0.1)
P 		269.7
(-1.5)
P 		226
(-2.2)
P 		181.9
(-3)
P 		318.9
(-0.6)
P 		525.7
(3)
P 		344
avr 328.2
(-0.3) 		313.9
(-0.7) 		250.7
(-2.4) 		230.5
(-3) 		323.3
(-0.4) 		446.7
(3) 		216
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193166_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12543
Sequence Type Exemplar sequence
Representative Public ID T27F2.3 NCBI
Target Description T27F2.3 /REP_DB=WormBase Gene ID /WP=CE06521 /GEN=bir-1 /TR=Q22837 /GB=CAA98553.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Inhibitor of Apoptosis domain.
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073548(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073548 NCBI Caenorhabditis elegans BIR (baculovirus inhibitory repeat) family member (bir-1) (bir-1) mRNA, complete cds. 11/11 None
SNAP00000017028 ENSEMBL cdna:SNAP chromosome:CEL140:V:11647352:11647863:1 11/11 None
GENEFINDER00000017035 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11647352:11647863:1 11/11 None
T27F2.3.2 ENSEMBL cdna:known chromosome:CEL140:V:11647151:11647954:1 gene:T27F2.3 11/11 None
T27F2.3.3 ENSEMBL cdna:known chromosome:CEL140:V:11647347:11647955:1 gene:T27F2.3 11/11 None
T27F2.3.1 ENSEMBL cdna:known chromosome:CEL140:V:11647349:11647957:1 gene:T27F2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11647351-11647863(+) 100.0 100.0
Public Domain and Genome References
Gene Title Inhibitor of Apoptosis domain.
Gene Symbol bir-1
Ensembl T27F2.3
Entrez Gene 179597 Entrez gene
SwissProt Q22837 EMBL-EBI
WormBase CE06521 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6916 anti-apoptosis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98553 Hypothetical protein T27F2.3 [Caenorhabditis elegans] ref|NP_505949.1| BIR (baculovirus inhibitory repeat) family member (bir-1) [Caenorhabditis elegans] gb|AAB94330.1| inhibitor of apoptosis homolog [Caenorhabditis elegans] 2.0E-88
blast CAE75322 Hypothetical protein CBG23296 [Caenorhabditis briggsae] 8.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR001370 EMBL-EBI Baculovirus inhibitor of apoptosis protein repeat (BIR) 5.0E-29
Sequence
Target Sequence 
>C. ELEGANS:193166_AT
gacccggatgcaaaatgcacgtctcaagcggttgctcaagccggattttactgcaccggt
cctcagtctggcaaatgtgcattttgcaacaaggaacttgattttgacccagaagacgat
ccgtggtacgagcacacgaaacgtgatgaaccgtgcgagtttgtacggattggaaagctc
gatgactcggaattaactattaacgataccgttcgtctctcacaaaccgccatgattatg
actaaactctttgagcatgagatgatgataaataatttgtctaatcattcttcttctgat
gctctcttcgatcagctgaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCCGGATGCAAAATGCACGTCTC 344 381 106 Antisense
GTCTCAAGCGGTTGCTCAAGCCGGA 413 469 126 Antisense
AGCCGGATTTTACTGCACCGGTCCT 50 79 144 Antisense
CCGGTCCTCAGTCTGGCAAATGTGC 410 263 161 Antisense
ATTTTGACCCAGAAGACGATCCGTG 578 13 206 Antisense
GACGATCCGTGGTACGAGCACACGA 184 379 220 Antisense
CGTGATGAACCGTGCGAGTTTGTAC 375 245 247 Antisense
CGGATTGGAAAGCTCGATGACTCGG 217 243 271 Antisense
TTAACGATACCGTTCGTCTCTCACA 231 685 305 Antisense
TCTCTCACAAACCGCCATGATTATG 324 609 321 Antisense
GATGCTCTCTTCGATCAGCTGAAAA 603 413 403 Antisense
Sequence Source Affymetrix Proprietary Database