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[193165_at] blood group RH(D) polypeptide

Description F08F3.3 /REP_DB=WormBase Gene ID /WP=CE09259 /GEN=rhr-1 /TR=Q22947 /GB=AAB04874.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=blood group RH(D) polypeptide
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 22      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 24      6grp_total > 22      4grp_total > 49      6grp_highest_sub > 02      6grp_cgc > 71      6grp_high1_sub > De      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2375
1 2 3 4 range
A 4587.4
(-2.9)
P 		6354.2
(3)
P 		6224.3
(2.6)
P 		4568.4
(-3)
P 		1786
B 4425.7
(-3)
P 		6504.4
(3)
P 		6400.8
(2.7)
P 		4531.9
(-2.7)
P 		2079
C 4129.9
(-3)
P 		6339.7
(3)
P 		5752.2
(1.4)
P 		4380.1
(-2.3)
P 		2210
avr 4381
(-3) 		6399.4
(3) 		6125.8
(2.2) 		4493.5
(-2.7) 		2018

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3272
1 2 3 4 5 6 range
A 3983.7
(1.7)
P 		4642.1
(3)
P 		3754.6
(1.3)
P 		2646.3
(-0.9)
P 		2064.6
(-2)
P 		1540.7
(-3)
P 		3101
B 3617.2
(1.3)
P 		4293.8
(2.6)
P 		4519.6
(3)
P 		2702.5
(-0.5)
P 		1868.1
(-2.1)
P 		1412
(-3)
P 		3108
C 3284.7
(0.7)
P 		3948.6
(2)
P 		4466
(3)
P 		2613.8
(-0.6)
P 		2138.3
(-1.5)
P 		1369.9
(-3)
P 		3096
avr 3628.5
(1.6) 		4294.8
(3) 		4246.7
(2.9) 		2654.2
(-0.4) 		2023.7
(-1.8) 		1440.9
(-3) 		2854
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1336
1 2 3 4 range
A 1670.3
(3)
P 		1379.3
(1.3)
P 		1627.2
(2.7)
P 		668.7
(-3)
P 		1002
B 1411.3
(1.2)
P 		1606.4
(3)
P 		1483.2
(1.8)
P 		965.8
(-3)
P 		641
C 1367.1
(-0)
P 		1822.7
(2.1)
P 		2004.8
(3)
P 		738.6
(-3)
P 		1266
avr 1482.9
(1.5) 		1602.8
(2.3) 		1705.1
(3) 		791
(-3) 		914

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1276
1 2 3 4 5 6 range
A 734.4
(-1.3)
P 		1651
(3)
P 		817.7
(-0.9)
P 		671.2
(-1.6)
P 		623
(-1.8)
P 		375.1
(-3)
P 		1276
B 1258.6
(1.9)
P 		1429.2
(3)
P 		1097.5
(0.8)
P 		715.8
(-1.7)
P 		759
(-1.5)
P 		526.5
(-3)
P 		903
C 1217.5
(3)
P 		1204.8
(2.9)
P 		1136.7
(2.4)
P 		525.6
(-2.5)
P 		691.9
(-1.2)
P 		458.6
(-3)
P 		759
avr 1070.2
(0.8) 		1428.3
(3) 		1017.3
(0.5) 		637.5
(-1.9) 		691.3
(-1.5) 		453.4
(-3) 		975
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193165_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11936
Sequence Type Exemplar sequence
Representative Public ID F08F3.3 NCBI
Target Description F08F3.3 /REP_DB=WormBase Gene ID /WP=CE09259 /GEN=rhr-1 /TR=Q22947 /GB=AAB04874.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=blood group RH(D) polypeptide
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072035(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072035 NCBI Caenorhabditis elegans RH (Rhesus) antigen Related family member (rhr-1) (rhr-1) mRNA, complete cds. 11/11 None
SNAP00000026683 ENSEMBL cdna:SNAP chromosome:CEL140:V:5428029:5430058:1 11/11 None
GENEFINDER00000026690 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5428029:5430058:1 11/11 None
F08F3.3.2 ENSEMBL cdna:known chromosome:CEL140:V:5427972:5430154:1 gene:F08F3.3 11/11 None
F08F3.3.1 ENSEMBL cdna:known chromosome:CEL140:V:5428009:5430231:1 gene:F08F3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5428028-5430058(+) 100.0 100.0
Public Domain and Genome References
Gene Title blood group RH(D) polypeptide
Gene Symbol rhr-1
Ensembl F08F3.3
Entrez Gene 178927 Entrez gene
SwissProt Q22947 EMBL-EBI
WormBase CE09259 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1601821_AT Rhesus blood group, B glycoprotein cfa
CANINE:1590626_AT Rhesus blood group, B glycoprotein cfa
CANINE:1582367_AT Rhesus blood group, B glycoprotein cfa
CANINE_2:CFA.35.1.A1_S_AT Rhesus blood group, B glycoprotein cfa
CANINE_2:CFA.7800.1.A1_AT Rhesus blood group, B glycoprotein cfa
DROSOPHILA_2:1624322_AT dm
DROSGENOME1:151895_AT dm
HG-U133_PLUS_2:220510_AT Rhesus blood group, B glycoprotein hs
HG-U133A:220510_AT Rhesus blood group, B glycoprotein hs
HG-FOCUS:220510_AT Rhesus blood group, B glycoprotein hs
HG-U133A_2:220510_AT Rhesus blood group, B glycoprotein hs
U133_X3P:G9966890_3P_AT Rhesus blood group, B glycoprotein hs
HG-U95D:78088_AT Rhesus blood group, B glycoprotein hs
MOE430A:1419134_AT Rhesus blood group-associated B glycoprotein mm
MOUSE430A_2:1419134_AT Rhesus blood group-associated B glycoprotein mm
MOUSE430_2:1419134_AT Rhesus blood group-associated B glycoprotein mm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB04874 Rh (rhesus) antigen related protein 1 [Caenorhabditis elegans] ref|NP_504436.1| RH (Rhesus) antigen Related family member (rhr-1) [Caenorhabditis elegans] 0.0
blast AAR97530 Rhesus protein 2 [Caenorhabditis briggsae] emb|CAE64631.1| Hypothetical protein CBG09391 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010256 EMBL-EBI Rh-like protein/ammonium transporter 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504436.1 12 13-35,55-74,81-103,118-137,144-161,171-193,205-227,242-259,271-293,298-320,332-354,389-411
F08F3.3.2 12 13-35,55-74,81-103,118-137,144-161,171-193,205-227,242-259,271-293,298-320,332-354,389-411
F08F3.3.1 12 13-35,55-74,81-103,118-137,144-161,171-193,205-227,242-259,271-293,298-320,332-354,389-411
SNAP00000026683 12 13-35,55-74,81-103,118-137,144-161,171-193,205-227,242-259,271-293,298-320,332-354,389-411
GENEFINDER00000026690 12 13-35,55-74,81-103,118-137,144-161,171-193,205-227,242-259,271-293,298-320,332-354,389-411
Sequence
Target Sequence 
>C. ELEGANS:193165_AT
ttcctagtctcccaagctgttgataagcataagcgctttgacatggtccacattgccaac
tcgacattggccggaggtgtcgccatcggaaccactgcaaatgttgttctcgagccatac
cacgctatgatcattggagtaattgccggagccgtttcagtcatcggatacaaatatatc
accccattcttgtctgagaaactcggaatccatgatacttgtggagtcaataatcttcat
ggaatgcctggacttattgccggattcgcgtcgatcgccttcttgttcatctacgatgaa
actagatatccagcacaatacgacaaaatctacccaggaatggctcgtggagaggatcga
accagaatgtttgatgagaagacccaggctttgaaccagcttatggcaatcggacttgtc
ttcttggcatcaactgtctctggatatttgaccggacttcttcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCTAGTCTCCCAAGCTGTTGATA 167 701 781 Antisense
GCGCTTTGACATGGTCCACATTGCC 110 289 813 Antisense
AAATGTTGTTCTCGAGCCATACCAC 147 119 879 Antisense
AATTGCCGGAGCCGTTTCAGTCATC 244 177 921 Antisense
CAAATATATCACCCCATTCTTGTCT 573 191 951 Antisense
TGGAATGCCTGGACTTATTGCCGGA 293 547 1020 Antisense
ATCGCCTTCTTGTTCATCTACGATG 575 37 1054 Antisense
GAAGACCCAGGCTTTGAACCAGCTT 622 339 1158 Antisense
GCAATCGGACTTGTCTTCTTGGCAT 111 323 1186 Antisense
TTCTTGGCATCAACTGTCTCTGGAT 504 689 1201 Antisense
TGGATATTTGACCGGACTTCTTCTA 390 551 1221 Antisense
Sequence Source Affymetrix Proprietary Database