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[193164_at]

Description C37E2.2 /REP_DB=WormBase Gene ID /WP=CE08621 /TR=Q93354 /GB=CAB02823.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=androgen-dependent expressed protein like
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 50      4grp_high_8_8 > 53      6grp_highest_nonorm > 71      6grp_total > 51      4grp_total > 51      6grp_highest_sub > 04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 186.7
(1.4)
P 		209.5
(3)
P 		186.5
(1.4)
P 		125.8
(-3)
A 		84
B 214.1
(0.8)
P 		275
(3)
P 		214.3
(0.8)
P 		108.9
(-3)
P 		166
C 188.8
(-2)
P 		250.6
(1.4)
P 		279.1
(3)
P 		171
(-3)
P 		108
avr 196.5
(0.3) 		245
(3) 		226.6
(2) 		135.2
(-3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 350
1 2 3 4 5 6 range
A 260.2
(-0.6)
P 		281.4
(-0.3)
P 		465.9
(2.9)
P 		472.3
(3)
P 		252.1
(-0.8)
P 		122.8
(-3)
P 		350
B 312.3
(0.4)
P 		331.3
(0.7)
P 		419.3
(2.4)
P 		449.4
(3)
P 		258.5
(-0.7)
P 		137
(-3)
P 		312
C 308.2
(0.5)
P 		363
(1.6)
P 		371.5
(1.8)
P 		430.1
(3)
P 		233.6
(-1.1)
P 		139.9
(-3)
P 		290
avr 293.6
(0) 		325.2
(0.6) 		418.9
(2.4) 		450.6
(3) 		248.1
(-0.8) 		133.2
(-3) 		317
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 68
(3)
P 		45.5
(0.3)
P 		48.8
(0.7)
P 		18.4
(-3)
A 		50
B 68.3
(3)
P 		67.9
(2.9)
P 		49.7
(0.5)
P 		23.2
(-3)
P 		45
C 62.5
(-0)
P 		72.1
(0.8)
P 		97.3
(3)
P 		28.8
(-3)
P 		69
avr 66.3
(3) 		61.8
(2.4) 		65.3
(2.9) 		23.5
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 48
(-1.8)
P 		100.1
(1.7)
P 		101.5
(1.8)
P 		119.8
(3)
P 		76.1
(0.1)
P 		29.9
(-3)
P 		90
B 108.7
(2.1)
P 		110.3
(2.2)
P 		101.8
(1.5)
P 		119
(3)
P 		105
(1.8)
P 		51.1
(-3)
P 		68
C 114.2
(3)
P 		110.8
(2.7)
P 		94.6
(1.3)
P 		86.5
(0.5)
P 		75.6
(-0.4)
P 		46.8
(-3)
P 		67
avr 90.3
(1.3) 		107.1
(2.9) 		99.3
(2.2) 		108.4
(3) 		85.6
(0.9) 		42.6
(-3) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193164_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17631
Sequence Type Exemplar sequence
Representative Public ID C37E2.2 NCBI
Target Description C37E2.2 /REP_DB=WormBase Gene ID /WP=CE08621 /TR=Q93354 /GB=CAB02823.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=androgen-dependent expressed protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029277(11), NR_002417(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029277 NCBI Caenorhabditis elegans C37E2.2a (C37E2.2) mRNA, complete cds. 11/11 None
NR_002417 NCBI Caenorhabditis elegans C37E2.2, miscRNA. 11/11 None
GENEFINDER00000011525 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14175970:14178391:1 11/11 None
C37E2.2 ENSEMBL cdna:known chromosome:CEL140:X:14175970:14178391:1 gene:C37E2.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011520 1/11 Cross Hyb Matching Probes None
SNAP00000011521 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14175969-14178391(+) 100.0 100.0
Public Domain and Genome References
Ensembl C37E2.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02823 Hypothetical protein C37E2.2a [Caenorhabditis elegans] ref|NP_001024448.1| C37E2.2a [Caenorhabditis elegans] 1.0E-131
blast CAB02823 Hypothetical protein C37E2.2a [Caenorhabditis elegans] ref|NP_001024448.1| C37E2.2a [Caenorhabditis elegans] 1.0E-125
blast CAE69934 Hypothetical protein CBG16310 [Caenorhabditis briggsae] 3.0E-83
blast CAE69934 Hypothetical protein CBG16310 [Caenorhabditis briggsae] 1.0E-77
blast CAB02824 Hypothetical protein C37E2.3 [Caenorhabditis elegans] ref|NP_510364.1| C37E2.3 [Caenorhabditis elegans] 5.0E-65
blast CAB02824 Hypothetical protein C37E2.3 [Caenorhabditis elegans] ref|NP_510364.1| C37E2.3 [Caenorhabditis elegans] 2.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR006838 EMBL-EBI FAR-17a/AIG1-like protein 9.3E-101
Pfam IPR006838 EMBL-EBI FAR-17a/AIG1-like protein 3.5E-23
Pfam IPR006838 EMBL-EBI FAR-17a/AIG1-like protein 7.4E-70
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024448.1 6 5-24,39-61,73-95,105-127,140-162,177-199
C37E2.2 6 5-24,39-61,73-95,105-127,140-162,177-199
GENEFINDER00000011525 4 5-24,39-61,177-199,209-231
Sequence
Target Sequence 
>C. ELEGANS:193164_AT
ttaggccatcactggtacgtctacaagcttgtgatgcttacaaatttgaattttgtgctt
tgcgtattttactcggtgatgatattgttgggatataagagtgaaaagttacaaaaaatt
tcagacttcatgcattttacttcaatatttccagttggaatgatcacttgtggattgttc
tggggactttatgccattaatcctgctctagttatgccggattggatagccaagctgatt
cctagttggttaaatcacataactcatacatacccaataattttcattattttggatagt
tactttcataaaaggacaccaccaaaaaccatagcgtcactaattttttctgcagcgtta
gtgtttgtgtatttcatgataatttgttatgtgagattctttgacggatattggctttat
ccgatactctccctgtttgcgtttgaacatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAGGCCATCACTGGTACGTCTACA 668 681 100 Antisense
GTGCTTTGCGTATTTTACTCGGTGA 639 479 154 Antisense
TTCAGACTTCATGCATTTTACTTCA 383 687 219 Antisense
GGGACTTTATGCCATTAATCCTGCT 359 495 282 Antisense
CCTGCTCTAGTTATGCCGGATTGGA 97 267 301 Antisense
GGATAGCCAAGCTGATTCCTAGTTG 687 509 323 Antisense
ATCACATAACTCATACATACCCAAT 252 27 353 Antisense
ACACCACCAAAAACCATAGCGTCAC 586 109 415 Antisense
GCGTCACTAATTTTTTCTGCAGCGT 26 293 433 Antisense
ATATTGGCTTTATCCGATACTCTCC 673 17 507 Antisense
CTCTCCCTGTTTGCGTTTGAACATT 311 231 526 Antisense
Sequence Source Affymetrix Proprietary Database