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[193162_s_at] cholinephosphate cytidylyltransferase

Description F08C6.2 /REP_DB=WormBase Gene ID /WP=CE02591 /TR=SW:P49583 /GB=AAA68722.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=cholinephosphate cytidylyltransferase
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 40      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 42      6grp_total > 52      4grp_total > 60      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1179
1 2 3 4 range
A 830.2
(1.5)
P 		884.4
(1.9)
P 		1044.5
(3)
P 		166.8
(-3)
P 		878
B 977.8
(1.8)
P 		997.7
(1.9)
P 		1163.3
(3)
P 		235.2
(-3)
P 		928
C 898.5
(0.5)
P 		918.7
(0.6)
P 		1345.9
(3)
P 		287.7
(-3)
P 		1058
avr 902.2
(1.2) 		933.6
(1.4) 		1184.6
(3) 		229.9
(-3) 		955

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 813
1 2 3 4 5 6 range
A 773.5
(-1.2)
P 		930.4
(0.2)
P 		1244.2
(3)
P 		985.1
(0.7)
P 		574.7
(-3)
P 		603.3
(-2.7)
P 		670
B 724.9
(-3)
P 		888.5
(-1.5)
P 		1387.5
(3)
P 		1112.1
(0.5)
P 		742.2
(-2.8)
P 		782.6
(-2.5)
P 		663
C 729.6
(-1.2)
P 		915.6
(1)
P 		1076.8
(3)
P 		975.1
(1.8)
P 		582.6
(-3)
P 		770.2
(-0.7)
P 		494
avr 742.7
(-1.9) 		911.5
(-0.2) 		1236.2
(3) 		1024.1
(0.9) 		633.2
(-3) 		718.7
(-2.1) 		603
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 445
1 2 3 4 range
A 302.3
(3)
P 		192
(0.6)
P 		273.1
(2.4)
P 		24.4
(-3)
P 		278
B 311.8
(3)
P 		246.4
(1.5)
P 		269.6
(2)
P 		50.1
(-3)
P 		262
C 297.4
(0.6)
P 		264.1
(0.1)
P 		469.1
(3)
P 		48.5
(-3)
P 		421
avr 303.8
(2.3) 		234.2
(0.9) 		337.3
(3) 		41
(-3) 		296

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 142.6
(-3)
P 		330.9
(3)
P 		271
(1.1)
P 		249.8
(0.4)
P 		173.4
(-2)
P 		146.9
(-2.9)
P 		188
B 252.2
(-3)
P 		295.8
(0.1)
P 		336.9
(3)
P 		294.6
(0)
P 		301.5
(0.5)
P 		291.8
(-0.2)
P 		85
C 270.4
(2.4)
P 		279.4
(3)
P 		274.1
(2.7)
P 		196.1
(-2.5)
P 		188.5
(-3)
P 		257.8
(1.6)
P 		91
avr 221.7
(-3) 		302
(3) 		294
(2.4) 		246.8
(-1.1) 		221.1
(-3) 		232.2
(-2.2) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193162_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16849
Sequence Type Exemplar sequence
Representative Public ID F08C6.2 NCBI
Target Description F08C6.2 /REP_DB=WormBase Gene ID /WP=CE02591 /TR=SW:P49583 /GB=AAA68722.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=cholinephosphate cytidylyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076884(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076884 NCBI Caenorhabditis elegans F08C6.2 (F08C6.2) mRNA, complete cds. 11/11 A 
SNAP00000044580 ENSEMBL cdna:SNAP chromosome:CEL140:X:7578714:7580676:1 11/11 None
GENEFINDER00000044585 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7578714:7580676:1 11/11 None
F08C6.2 ENSEMBL cdna:known chromosome:CEL140:X:7572053:7581001:1 gene:F08C6.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7578733-7580675(+) 100.0 100.0
Public Domain and Genome References
Gene Title cholinephosphate cytidylyltransferase
Ensembl F08C6.2
Entrez Gene 181021 Entrez gene
SwissProt P49583 EMBL-EBI
WormBase CE30937 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:19616_S_AT cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative at
ATGENOME1:20361_S_AT cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative at
ATH1-121501:266359_AT cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative at
CANINE:1589983_S_AT similar to Choline-phosphate cytidylyltransferase A (Phosphorylcholine transferase A) (CTP:phosphocholine cytidylyltransferase A) (CT A) (CCT A) (CCT-alpha) cfa
CANINE_2:CFA.1603.1.A1_AT similar to Choline-phosphate cytidylyltransferase A (Phosphorylcholine transferase A) (CTP:phosphocholine cytidylyltransferase A) (CT A) (CCT A) (CCT-alpha) cfa
CANINE_2:CFAAFFX.20081.1.S1_S_AT similar to Choline-phosphate cytidylyltransferase A (Phosphorylcholine transferase A) (CTP:phosphocholine cytidylyltransferase A) (CT A) (CCT A) (CCT-alpha) cfa
DROSOPHILA_2:1629930_S_AT CTP:phosphocholine cytidylyltransferase 1 dm
DROSGENOME1:155144_AT CTP:phosphocholine cytidylyltransferase 1 dm
CHICKEN:GGAAFFX.22253.1.S1_AT similar to Cholinephosphate cytidylyltransferase A (Phosphorylcholine transferase A) (CTP:phosphocholine cytidylyltransferase A) (CT A) (CCT A) (CCT-alpha) gga
HG-U133A:204210_S_AT phosphate cytidylyltransferase 1, choline, alpha hs
HG-U133_PLUS_2:204210_S_AT phosphate cytidylyltransferase 1, choline, alpha hs
HG-U133A_2:204210_S_AT phosphate cytidylyltransferase 1, choline, alpha hs
HUGENEFL:L28957_AT phosphate cytidylyltransferase 1, choline, alpha hs
U133_X3P:G4826887_3P_A_AT phosphate cytidylyltransferase 1, choline, alpha hs
HG-U95AV2:39285_AT phosphate cytidylyltransferase 1, choline, alpha hs
HG-U133A_2:204209_AT Phosphate cytidylyltransferase 1, choline, alpha hs
HG-FOCUS:204209_AT Phosphate cytidylyltransferase 1, choline, alpha hs
HG-U133_PLUS_2:204209_AT Phosphate cytidylyltransferase 1, choline, alpha hs
HG-U133A:204209_AT Phosphate cytidylyltransferase 1, choline, alpha hs
HU35KSUBB:RC_W15580_AT Phosphate cytidylyltransferase 1, choline, alpha hs
U133_X3P:HS2.303026.1.S1_3P_S_AT Phosphate cytidylyltransferase 1, choline, alpha hs
U133_X3P:HS.311002.0.S1_3P_AT Phosphate cytidylyltransferase 1, choline, alpha hs
U133_X3P:HS.273558.0.S2_3P_AT Phosphate cytidylyltransferase 1, choline, alpha hs
HG-U133_PLUS_2:1557705_A_AT Phosphate cytidylyltransferase 1, choline, alpha hs
HG-U133_PLUS_2:225069_AT Phosphate cytidylyltransferase 1, choline, alpha hs
HG-U133B:225069_AT Phosphate cytidylyltransferase 1, choline, alpha hs
HG-U95B:53888_AT Phosphate cytidylyltransferase 1, choline, alpha hs
HG-U95E:88822_AT Phosphate cytidylyltransferase 1, choline, alpha hs
HG-U95C:64230_R_AT Phosphate cytidylyltransferase 1, choline, alpha hs
HU35KSUBB:RC_H41892_AT Phosphate cytidylyltransferase 1, choline, alpha hs
MOE430A:1450434_S_AT phosphate cytidylyltransferase 1, choline, alpha isoform mm
MOUSE430A_2:1450434_S_AT phosphate cytidylyltransferase 1, choline, alpha isoform mm
MOUSE430_2:1450434_S_AT phosphate cytidylyltransferase 1, choline, alpha isoform mm
MU11KSUBA:U84207_S_AT phosphate cytidylyltransferase 1, choline, alpha isoform mm
MU11KSUBB:MSA.2230.0_S_AT phosphate cytidylyltransferase 1, choline, alpha isoform mm
MG-U74AV2:99035_AT phosphate cytidylyltransferase 1, choline, alpha isoform mm
MG-U74AV2:161074_AT phosphate cytidylyltransferase 1, choline, alpha isoform mm
MOE430A:1421957_A_AT phosphate cytidylyltransferase 1, choline, alpha isoform mm
MOUSE430A_2:1421957_A_AT phosphate cytidylyltransferase 1, choline, alpha isoform mm
MOUSE430_2:1421957_A_AT phosphate cytidylyltransferase 1, choline, alpha isoform mm
MOE430A:1424453_AT phosphate cytidylyltransferase 1, choline, alpha isoform mm
MOUSE430A_2:1424453_AT phosphate cytidylyltransferase 1, choline, alpha isoform mm
MOUSE430_2:1424453_AT phosphate cytidylyltransferase 1, choline, alpha isoform mm
MOE430A:1438011_AT phosphate cytidylyltransferase 1, choline, alpha isoform mm
MOUSE430A_2:1438011_AT phosphate cytidylyltransferase 1, choline, alpha isoform mm
MOUSE430_2:1438011_AT phosphate cytidylyltransferase 1, choline, alpha isoform mm
MU19KSUBC:TC39076_AT Phosphate cytidylyltransferase 1, choline, alpha isoform, mRNA (cDNA clone MGC:18635 IMAGE:4162053) mm
RG-U34A:RC_AA925887_AT phosphate cytidylyltransferase 1, choline, alpha isoform rn
RAE230A:1369656_AT phosphate cytidylyltransferase 1, choline, alpha isoform rn
RAT230_2:1369656_AT phosphate cytidylyltransferase 1, choline, alpha isoform rn
RAE230A:1389299_AT Phosphate cytidylyltransferase 1, choline, alpha isoform rn
RAT230_2:1389299_AT Phosphate cytidylyltransferase 1, choline, alpha isoform rn
RG-U34B:RC_AI011058_AT Phosphate cytidylyltransferase 1, choline, alpha isoform rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9058 biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16779 nucleotidyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68722 Hypothetical protein F08C6.2a [Caenorhabditis elegans] ref|NP_509285.2| F08C6.2 [Caenorhabditis elegans] sp|P49583|PCY1_CAEEL Putative choline-phosphate cytidylyltransferase (Phosphorylcholine transferase) (CTP:phosphocholine cytidylyltransferase) (CT) (CCT) 1.0E-178
blast ABA54423 Hypothetical protein F08C6.2b [Caenorhabditis elegans] 1.0E-173
blast AAA68722 Hypothetical protein F08C6.2a [Caenorhabditis elegans] ref|NP_509285.2| F08C6.2 [Caenorhabditis elegans] sp|P49583|PCY1_CAEEL Putative choline-phosphate cytidylyltransferase (Phosphorylcholine transferase) (CTP:phosphocholine cytidylyltransferase) (CT) (CCT) 1.0E-173
blast CAE70244 Hypothetical protein CBG16733 [Caenorhabditis briggsae] 1.0E-143
Protein Domains
Database ID Description E-Value
Pfam IPR004820 EMBL-EBI Cytidylyltransferase 5.9E-38
Pfam IPR004820 EMBL-EBI Cytidylyltransferase 5.9E-38
Sequence
Target Sequence 
>C. ELEGANS:193162_S_AT
ccatggttttgtactgtcgagtttttgaaaaaccttaaagttgatttcattgctcatgac
gctattccatatgttgcaccaggagaggaggacttgtatgagaagtttcgtagagaagga
atgttcttggaaacggaacgaactgaaggtgtctctacaagtgacgtcgtctgcagaatc
atccgtgattacgataagtacgtgcgtcgtaatttgcaaagaggatattcaccgaaagag
ctcaacgtcggatttttggcggcaagtaagtatcaaattcaaaacaaagtcgactcgttg
aaaagcaagggaatcgagcttctgtccacctggaaaagcaaatcagacgatatcatccgg
gacttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATGGTTTTGTACTGTCGAGTTTT 482 261 427 Antisense
AGTTGATTTCATTGCTCATGACGCT 405 65 465 Antisense
TCATGACGCTATTCCATATGTTGCA 127 621 480 Antisense
GGAACGAACTGAAGGTGTCTCTACA 604 529 561 Antisense
GTGTCTCTACAAGTGACGTCGTCTG 342 487 575 Antisense
ACGTCGTCTGCAGAATCATCCGTGA 244 93 590 Antisense
GGATATTCACCGAAAGAGCTCAACG 613 509 649 Antisense
GCTCAACGTCGGATTTTTGGCGGCA 443 301 666 Antisense
GCAAGGGAATCGAGCTTCTGTCCAC 391 321 731 Antisense
GAGCTTCTGTCCACCTGGAAAAGCA 294 389 742 Antisense
ATCAGACGATATCATCCGGGACTTT 474 27 768 Antisense
Sequence Source Affymetrix Proprietary Database