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[193159_s_at] Hypothetical protein A (T. aquaticus)

Description T05G5.5 /REP_DB=WormBase Gene ID /WP=CE23950 /TR=SW:P34558 /GB=CAA81598.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Hypothetical protein A (T. aquaticus)
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 84      4grp_highest_8_8 > 38      4grp_high_8_8 > 04      6grp_highest_nonorm > 64      6grp_total > 74      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 401
1 2 3 4 range
A 597.3
(-0.8)
P 		486.1
(-3)
P 		595.3
(-0.8)
P 		788.2
(3)
P 		302
B 703.1
(0)
P 		514.1
(-3)
P 		564.7
(-2.2)
P 		887
(3)
P 		373
C 636.2
(-1.4)
P 		565.1
(-3)
P 		572
(-2.8)
P 		836.4
(3)
P 		271
avr 645.5
(-0.6) 		521.8
(-3) 		577.3
(-1.9) 		837.2
(3) 		315

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 355
1 2 3 4 5 6 range
A 708.8
(-2.4)
P 		691.6
(-3)
P 		823.2
(1.9)
P 		852.6
(3)
P 		693.2
(-2.9)
P 		802.3
(1.1)
P 		161
B 607.6
(-3)
P 		612.6
(-2.9)
P 		848.3
(1.3)
P 		836.2
(1.1)
P 		944.3
(3)
P 		908.4
(2.4)
P 		337
C 705.4
(-1.1)
P 		592.6
(-3)
P 		817.4
(0.8)
P 		945.6
(3)
P 		777
(0.1)
P 		947.2
(3)
P 		355
avr 673.9
(-2) 		632.3
(-3) 		829.6
(1.7) 		878.1
(2.8) 		804.8
(1.1) 		886
(3) 		254
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 217.5
(3)
P 		105.5
(-3)
P 		155.6
(-0.3)
P 		115.4
(-2.5)
P 		112
B 224.2
(3)
P 		127
(-3)
P 		130.9
(-2.8)
P 		189
(0.8)
P 		97
C 210.6
(3)
P 		162.5
(-1.1)
P 		199.3
(2)
P 		141
(-3)
P 		70
avr 217.4
(3) 		131.7
(-3) 		161.9
(-0.9) 		148.5
(-1.8) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 253
1 2 3 4 5 6 range
A 130.7
(-3)
P 		246
(3)
P 		179.3
(-0.5)
P 		216.2
(1.4)
P 		209.2
(1.1)
P 		195.3
(0.4)
P 		115
B 211.4
(-2.7)
P 		203.9
(-3)
P 		206
(-2.9)
P 		221.5
(-2.4)
P 		383.7
(3)
P 		338.8
(1.5)
P 		180
C 261.4
(0.5)
P 		180.8
(-3)
P 		208
(-1.8)
P 		190.2
(-2.6)
P 		251.4
(0.1)
P 		317.1
(3)
P 		136
avr 201.2
(-2.8) 		210.2
(-2.1) 		197.8
(-3) 		209.3
(-2.2) 		281.4
(2.8) 		283.7
(3) 		86
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193159_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7984
Sequence Type Exemplar sequence
Representative Public ID T05G5.5 NCBI
Target Description T05G5.5 /REP_DB=WormBase Gene ID /WP=CE23950 /TR=SW:P34558 /GB=CAA81598.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Hypothetical protein A (T. aquaticus)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066754(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066754 NCBI Caenorhabditis elegans T05G5.5 (T05G5.5) mRNA, complete cds. 11/11 None
SNAP00000019879 ENSEMBL cdna:SNAP chromosome:CEL140:III:9749606:9750815:-1 11/11 None
GENEFINDER00000019889 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9749606:9750815:-1 11/11 None
T05G5.5 ENSEMBL cdna:known chromosome:CEL140:III:9749397:9751315:-1 gene:T05G5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9749601-9751190(-) 100.0 100.0
Public Domain and Genome References
Gene Title Hypothetical protein A (T. aquaticus)
Ensembl T05G5.5
Entrez Gene 176375 Entrez gene
SwissProt P34558 EMBL-EBI
WormBase CE23950 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15911_AT dephospho-CoA kinase family at
ATH1-121501:265637_AT dephospho-CoA kinase family at
CANINE_2:CFAAFFX.21516.1.S1_AT similar to CG1939-PA cfa
DROSOPHILA_2:1639133_AT dm
DROSGENOME1:149421_AT dm
HG-U133_PLUS_2:221225_AT hypothetical protein FLJ22955 hs
HG-U133A:221225_AT hypothetical protein FLJ22955 hs
HG-U133A_2:221225_AT hypothetical protein FLJ22955 hs
HG-U133_PLUS_2:221224_S_AT hypothetical protein FLJ22955 hs
HG-U133A:221224_S_AT hypothetical protein FLJ22955 hs
HG-U133A_2:221224_S_AT hypothetical protein FLJ22955 hs
HG-U133B:224522_S_AT hypothetical protein FLJ22955 hs
HG-U133_PLUS_2:224522_S_AT hypothetical protein FLJ22955 hs
U133_X3P:G13623688_3P_S_AT hypothetical protein FLJ22955 hs
U133_X3P:G13376213_3P_AT hypothetical protein FLJ22955 hs
HG-U95C:62943_AT hypothetical protein FLJ22955 hs
HG-U95D:85330_AT hypothetical protein FLJ22955 hs
HG-U95B:43182_AT Hypothetical protein FLJ22955 hs
HG-U133_PLUS_2:232447_AT Hypothetical protein FLJ22955 hs
HG-U133B:232447_AT Hypothetical protein FLJ22955 hs
HU35KSUBD:RC_N21276_AT Hypothetical protein FLJ22955 hs
U133_X3P:HS.191341.0.S1_3P_AT Hypothetical protein FLJ22955 hs
HU35KSUBB:RC_W87582_AT Hypothetical protein FLJ22955 hs
MG-U74BV2:109750_AT RIKEN cDNA 6720485C15 gene mm
MOE430A:1460205_AT RIKEN cDNA 6720485C15 gene mm
MOUSE430A_2:1460205_AT RIKEN cDNA 6720485C15 gene mm
MOUSE430_2:1460205_AT RIKEN cDNA 6720485C15 gene mm
MOE430B:1431560_AT RIKEN cDNA 6720485C15 gene mm
MOUSE430_2:1431560_AT RIKEN cDNA 6720485C15 gene mm
MU19KSUBA:TC16085_AT RIKEN cDNA 6720485C15 gene (6720485C15Rik), mRNA mm
MU19KSUBA:TC23015_AT RIKEN cDNA 6720485C15 gene (6720485C15Rik), mRNA mm
RAE230A:1389274_AT similar to RIKEN cDNA 6720485C15 rn
RAT230_2:1389274_AT similar to RIKEN cDNA 6720485C15 rn
RG-U34A:RC_AA800803_AT similar to RIKEN cDNA 6720485C15 rn
RG-U34A:RC_AA800803_G_AT similar to RIKEN cDNA 6720485C15 rn
RG-U34B:RC_AA900992_AT similar to RIKEN cDNA 6720485C15 rn
RG-U34C:RC_AI102585_AT similar to RIKEN cDNA 6720485C15 rn
RAE230B:1379861_AT similar to RIKEN cDNA 6720485C15 rn
RAT230_2:1379861_AT similar to RIKEN cDNA 6720485C15 rn
RAE230B:1395562_AT Similar to RIKEN cDNA 6720485C15 rn
RAT230_2:1395562_AT Similar to RIKEN cDNA 6720485C15 rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4849 uridine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA81598 Hypothetical protein T05G5.5 [Caenorhabditis elegans] ref|NP_499155.1| T05G5.5 [Caenorhabditis elegans] sp|P34558|YNP5_CAEEL Hypothetical protein T05G5.5 in chromosome III 1.0E-135
blast B88564 protein T05G5.5 [imported] - Caenorhabditis elegans 1.0E-129
blast CAA81598 Hypothetical protein T05G5.5 [Caenorhabditis elegans] ref|NP_499155.1| T05G5.5 [Caenorhabditis elegans] sp|P34558|YNP5_CAEEL Hypothetical protein T05G5.5 in chromosome III 1.0E-128
blast B88564 protein T05G5.5 [imported] - Caenorhabditis elegans 1.0E-128
blast CAE65139 Hypothetical protein CBG10005 [Caenorhabditis briggsae] 1.0E-123
Protein Domains
Database ID Description E-Value
Pfam IPR001977 EMBL-EBI Dephospho-CoA kinase 2.8E-116
Pfam IPR001977 EMBL-EBI Dephospho-CoA kinase 2.8E-116
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499155.1 1 213-232
T05G5.5 1 213-232
SNAP00000019879 1 203-222
GENEFINDER00000019889 1 203-222
Sequence
Target Sequence 
>C. ELEGANS:193159_S_AT
gagctcacggagttccaatcatcgatgcggatcaagtggctaggcaagttgtcgttcctg
gaacttctacctacaaccgactgcgaaaagaatttggagacgagtatttcgacgatgagc
acgggggcgttttgcgacgggataagctgggaaaactgattttcagcaatccagagaagc
ggaaggcattgaatggaatcactcatccagcgatccgttgggagatgttcaagcaatttc
tgacactgctgatcactggaacaaagtacatcgtcttcgatactccactcctcttcgaaa
gcggatatgacaaatggattggaactacgatcgttgtttggtgcgactttgagcaagaag
ttgaacgaatggtgactagggacaacatttctcgagctgatgcggaatcaagaattcatg
ctcaaatggacattgaagaaaaaaagaaacgcgccaagatcgtcatcgacaacaatggaa
acatcgacgagctccgggagaaagtaaaacacgtcatcgctcaattggacaagtcgtgga
aaccatacattttccgagttgcattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCTCACGGAGTTCCAATCATCGA 658 387 107 Antisense
GGCTAGGCAAGTTGTCGTTCCTGGA 365 537 144 Antisense
TCCTGGAACTTCTACCTACAACCGA 634 591 162 Antisense
CGATGAGCACGGGGGCGTTTTGCGA 559 245 219 Antisense
ATTTCTGACACTGCTGATCACTGGA 234 17 342 Antisense
CTCCACTCCTCTTCGAAAGCGGATA 420 235 389 Antisense
TAGGGACAACATTTCTCGAGCTGAT 454 653 483 Antisense
AGAAACGCGCCAAGATCGTCATCGA 265 73 551 Antisense
AAACATCGACGAGCTCCGGGAGAAA 252 127 585 Antisense
GTAAAACACGTCATCGCTCAATTGG 326 461 610 Antisense
ACCATACATTTTCCGAGTTGCATTC 552 85 648 Antisense
Sequence Source Affymetrix Proprietary Database