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[193158_at] Lectin C-type domain short and long forms

Description ZK39.7 /REP_DB=WormBase Gene ID /WP=CE19318 /TR=Q9XUI6 /GB=CAB05014.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster 6grp_total > 80      4grp_total > 16      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 12.8
(-1.9)
A 		5.8
(-3)
A 		12.8
(-1.9)
A 		44.2
(3)
A 		38
B 7.1
(-3)
A 		18.7
(-0.8)
A 		35.7
(2.5)
A 		38.2
(3)
A 		31
C 10.5
(-3)
A 		16.5
(-1.8)
A 		30.4
(0.8)
A 		41.6
(3)
A 		31
avr 10.1
(-3) 		13.7
(-2.3) 		26.3
(0.1) 		41.3
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 5.5
(-3)
A 		23.6
(3)
A 		19.8
(1.7)
A 		19.4
(1.6)
A 		6.5
(-2.7)
A 		8.6
(-2)
A 		18
B 24.9
(0.4)
A 		6.4
(-3)
A 		16.9
(-1.1)
A 		38.2
(2.9)
A 		10.7
(-2.2)
A 		38.8
(3)
A 		32
C 7.6
(-2.3)
A 		9.8
(-1.7)
A 		4.4
(-3)
A 		30.1
(3)
A 		12
(-1.2)
A 		22.6
(1.2)
A 		26
avr 12.7
(-2.1) 		13.3
(-1.9) 		13.7
(-1.8) 		29.2
(3) 		9.7
(-3) 		23.3
(1.2) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 4.7
(0.9)
A 		1.3
(-3)
A 		3.3
(-0.7)
A 		6.5
(3)
A 		5
B 2.3
(-3)
A 		4.6
(-0.7)
A 		8.3
(3)
A 		8.1
(2.8)
A 		6
C 3.5
(-3)
A 		4.7
(-2)
A 		10.6
(3)
A 		7
(-0)
A 		7
avr 3.5
(-3) 		3.5
(-3) 		7.4
(3) 		7.2
(2.7) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1
(-3)
A 		8.4
(3)
A 		4.3
(-0.3)
A 		4.9
(0.2)
A 		1.9
(-2.3)
A 		2.1
(-2.1)
A 		7
B 8.7
(0.2)
A 		2.1
(-3)
A 		4.1
(-2)
A 		10.1
(0.9)
A 		4.3
(-1.9)
A 		14.5
(3)
A 		12
C 2.8
(-1.4)
A 		3
(-1.2)
A 		1.1
(-3)
A 		6
(1.5)
A 		3.9
(-0.4)
A 		7.6
(3)
A 		7
avr 4.2
(-1.8) 		4.5
(-1.4) 		3.2
(-3) 		7
(1.7) 		3.4
(-2.8) 		8.1
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193158_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.982
Sequence Type Exemplar sequence
Representative Public ID ZK39.7 NCBI
Target Description ZK39.7 /REP_DB=WormBase Gene ID /WP=CE19318 /TR=Q9XUI6 /GB=CAB05014.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060470(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060470 NCBI Caenorhabditis elegans ZK39.7 (ZK39.7) mRNA, complete cds. 11/11 None
GENEFINDER00000035811 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11162337:11163493:-1 11/11 None
ZK39.7 ENSEMBL cdna:known chromosome:CEL140:I:11162337:11163493:-1 gene:ZK39.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035807 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11162267-11163424(-) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms
Ensembl ZK39.7
Entrez Gene 191215 Entrez gene
SwissProt Q9XUI6 EMBL-EBI
WormBase CE19318 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05014 Hypothetical protein ZK39.7 [Caenorhabditis elegans] ref|NP_492871.1| ZK39.7 [Caenorhabditis elegans] 1.0E-135
blast CAE63492 Hypothetical protein CBG07961 [Caenorhabditis briggsae] 2.0E-66
blast CAB05021 Hypothetical protein ZK39.8 [Caenorhabditis elegans] ref|NP_492872.1| ZK39.8 [Caenorhabditis elegans] 3.0E-54
Sequence
Target Sequence 
>C. ELEGANS:193158_AT
acgagaggctgtgactctggctggaaacgcttcaaccgtccatccggtgcctggtgcatt
cgtatataccggggaactcactctcaagctgacgccgaaaaccgttgccgccaaaatgtg
ggggccacgctgtcaggagtgcagaatcaagtggagatcaacttcattactaaatccgct
ttggatctaatctcagaagccagtggatctatatggatcgggggaaggagaacccaggcg
tgtcggaactcggctctgtccacttcctgcggatccttgaactctttccaatggacggat
ggatctacgacaggaactgctggcttagtatggaatactaatcaacctgataataaagat
tcaaggagtcaacagtgcttagtgctccttgcatcccgtgcttcctcgatccaggataaa
tggacatggtacgcaaatcggatggatgatgtgcagtgtgctgcttctggtggggagagt
gctgcaagagctctgagagcctatgcttatatgaactttatttgtaatccttttgcaatc
ctttatttttcaactcaattaggcttctcaattaggtcgcaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGAGAGGCTGTGACTCTGGCTGGA 574 93 163 Antisense
TCTGGCTGGAAACGCTTCAACCGTC 574 607 178 Antisense
GGTGCCTGGTGCATTCGTATATACC 643 501 208 Antisense
GTATATACCGGGGAACTCACTCTCA 27 451 224 Antisense
CAAGCTGACGCCGAAAACCGTTGCC 128 185 247 Antisense
GTTGCCGCCAAAATGTGGGGGCCAC 596 439 266 Antisense
GGCCACGCTGTCAGGAGTGCAGAAT 569 543 285 Antisense
CAACAGTGCTTAGTGCTCCTTGCAT 301 189 532 Antisense
GATGTGCAGTGTGCTGCTTCTGGTG 362 409 610 Antisense
GTAATCCTTTTGCAATCCTTTATTT 238 455 686 Antisense
TAGGCTTCTCAATTAGGTCGCAAAC 384 653 722 Antisense
Sequence Source Affymetrix Proprietary Database