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[193155_s_at] protein phosphatase PP2A subunit A repeat

Description F46C5.6 /REP_DB=WormBase Gene ID /WP=CE20811 /TR=O17873 /GB=CAB03367.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=protein phosphatase PP2A subunit A repeat
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 36      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 70      6grp_total > 35      4grp_total > 14      6grp_highest_sub > De      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 329.2
(0.8)
P 		192.8
(-3)
P 		207.9
(-2.6)
P 		408.2
(3)
P 		215
B 395.5
(3)
P 		246.3
(-3)
P 		250.3
(-2.8)
P 		314.5
(-0.3)
P 		149
C 304.6
(-0)
P 		236.4
(-2.2)
P 		210.8
(-3)
P 		400.8
(3)
P 		190
avr 343.1
(1.8) 		225.2
(-2.9) 		223
(-3) 		374.5
(3) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 330
1 2 3 4 5 6 range
A 448.4
(3)
P 		339.9
(0.4)
P 		307.4
(-0.4)
P 		213.2
(-2.6)
P 		196.1
(-3)
P 		219.2
(-2.5)
P 		252
B 316.3
(1.5)
P 		333.8
(1.9)
P 		383.9
(3)
P 		296.5
(1)
P 		118.9
(-3)
P 		278.6
(0.6)
P 		265
C 309
(0.8)
P 		397.7
(3)
P 		324.9
(1.2)
P 		240.9
(-0.9)
P 		155.3
(-3)
P 		324.6
(1.2)
P 		242
avr 357.9
(3) 		357.1
(3) 		338.7
(2.4) 		250.2
(-0.2) 		156.8
(-3) 		274.1
(0.5) 		201
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 119.9
(3)
P 		41.8
(-3)
P 		54.4
(-2)
P 		59.8
(-1.6)
P 		78
B 126.1
(3)
P 		60.8
(-2.8)
P 		58
(-3)
P 		67
(-2.2)
P 		68
C 100.8
(3)
P 		68
(-2.9)
P 		73.5
(-1.9)
P 		67.6
(-3)
P 		33
avr 115.6
(3) 		56.9
(-3) 		62
(-2.5) 		64.8
(-2.2) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 82.7
(-0.4)
P 		120.9
(3)
P 		66.9
(-1.8)
P 		54.1
(-2.9)
P 		59.2
(-2.5)
P 		53.4
(-3)
P 		68
B 110.1
(2.9)
P 		111.1
(3)
P 		93.2
(1.3)
P 		78.5
(-0.1)
P 		48.3
(-3)
P 		103.9
(2.3)
P 		63
C 114.5
(2.4)
P 		121.4
(3)
P 		82.7
(-0.2)
P 		48.5
(-3)
P 		50.2
(-2.9)
P 		108.7
(2)
P 		73
avr 102.4
(1.6) 		117.8
(3) 		80.9
(-0.4) 		60.4
(-2.3) 		52.6
(-3) 		88.7
(0.3) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193155_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3398
Sequence Type Exemplar sequence
Representative Public ID F46C5.6 NCBI
Target Description F46C5.6 /REP_DB=WormBase Gene ID /WP=CE20811 /TR=O17873 /GB=CAB03367.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=protein phosphatase PP2A subunit A repeat
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063483(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063483 NCBI Caenorhabditis elegans F46C5.6 (F46C5.6) mRNA, complete cds. 11/11 A 
F46C5.6 ENSEMBL cdna:known chromosome:CEL140:II:8840121:8844613:-1 gene:F46C5.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8840462-8844610(-) 96.2 100.0
Public Domain and Genome References
Gene Title protein phosphatase PP2A subunit A repeat
Ensembl F46C5.6
Entrez Gene 174413 Entrez gene
SwissProt O17873 EMBL-EBI
WormBase CE32892 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.26993.1.S1_AT similar to HEAT-like repeat-containing protein isoform 1 cfa
CHICKEN:GGAAFFX.6926.1.S1_AT similar to HEAT-like repeat-containing protein isoform 1; HEAT-like repeat-containing protein; MGC4163 protein gga
HG-U133_PLUS_2:233002_AT KIAA1622 hs
HG-U133B:233002_AT KIAA1622 hs
HG-U133_PLUS_2:220673_S_AT KIAA1622 hs
HG-U133A:220673_S_AT KIAA1622 hs
HG-U133A_2:220673_S_AT KIAA1622 hs
HG-U133_PLUS_2:220672_AT KIAA1622 hs
HG-U133A:220672_AT KIAA1622 hs
HG-U133A_2:220672_AT KIAA1622 hs
U133_X3P:G13124766_3P_AT KIAA1622 hs
U133_X3P:HS.259599.1.S1_3P_AT KIAA1622 hs
MOE430B:1443851_AT RIKEN cDNA 8430415E04 gene mm
MOUSE430_2:1443851_AT RIKEN cDNA 8430415E04 gene mm
Protein Similarities
Method ID Description E-Value
blast CAB03367 Hypothetical protein F46C5.6 [Caenorhabditis elegans] emb|CAA91051.2| Hypothetical protein F46C5.6 [Caenorhabditis elegans] ref|NP_495884.2| F46C5.6 [Caenorhabditis elegans] 0.0
blast CAE59749 Hypothetical protein CBG03194 [Caenorhabditis briggsae] 0.0
blast XP_393531 PREDICTED: similar to HEAT-like repeat-containing protein [Apis mellifera] 1.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR000357 EMBL-EBI HEAT 1.9E-10
Pfam IPR000357 EMBL-EBI HEAT 4.5E-8
Sequence
Target Sequence 
>C. ELEGANS:193155_S_AT
tgttgctgaacttgttctctccgtatttagtaaacgaatatttattcaacatttcctaga
cgacacattacggctaacttctgatccagtttcaaatatcagaattcgagcaatcaaatt
tctcccaaaaattaaatctaaattgattttaccagaagatgaggaggttcttttgaaaat
tgagaattctgtgaaagaacagctaaaatcaacggaactgaacgggccaacaagagctct
catcaatcaggcagctgttgagttatcaagatgtgaaacttgttccgatagcgaagataa
taaaaaagtaaatgaagaagaggaattatggagtaaaaagaaagaaaagagcaagaaaga
atcaaagataaggaaaccaagtataagaacttacgaatcccgacgcaaccaatccgtgca
acatccccttggagaacagaacgaaaagcaattgcagtcgtccgtccgcagccactccaa
aagaatcagcgattcgtccaagtcgattaccattaagcagtgctgcaaaagaaagagaca
aactgagaaaaacagcaacagatgccccaccaccaccagcaagaagtgctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTGCTGAACTTGTTCTCTCCGTA 76 563 1938 Antisense
TTCAACATTTCCTAGACGACACATT 564 685 1982 Antisense
GACACATTACGGCTAACTTCTGATC 336 365 1999 Antisense
TGAACGGGCCAACAAGAGCTCTCAT 549 571 2156 Antisense
GAGCTCTCATCAATCAGGCAGCTGT 510 387 2171 Antisense
GTGCAACATCCCCTTGGAGAACAGA 457 479 2353 Antisense
GAAAAGCAATTGCAGTCGTCCGTCC 144 355 2380 Antisense
GAATCAGCGATTCGTCCAAGTCGAT 491 327 2420 Antisense
GTCGATTACCATTAAGCAGTGCTGC 468 473 2439 Antisense
AAAAACAGCAACAGATGCCCCACCA 156 131 2485 Antisense
CACCACCACCAGCAAGAAGTGCTCG 94 203 2505 Antisense
Sequence Source Affymetrix Proprietary Database