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[193154_at] cell division control protein

Description F10B5.6 /REP_DB=WormBase Gene ID /WP=CE01548 /GEN=emb-27 /TR=Q09536 /GB=CAA88313.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=cell division control protein
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_highest_8_8 > 27      4grp_high_8_8 > 57      6grp_highest_nonorm > 97      6grp_total > 77      4grp_total > 63      6grp_highest_sub > Da      6grp_cgc > 48      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 364
1 2 3 4 range
A 884.8
(3)
P 		625.6
(-2.7)
P 		853.2
(2.3)
P 		612.9
(-3)
P 		272
B 737.6
(-0.2)
P 		800
(1.4)
P 		858.8
(3)
P 		633.7
(-3)
P 		225
C 851
(0.8)
P 		629.5
(-3)
P 		976.4
(3)
P 		679.4
(-2.1)
P 		347
avr 824.5
(1.3) 		685
(-2) 		896.1
(3) 		642
(-3) 		254

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 950
1 2 3 4 5 6 range
A 833.9
(-1.3)
P 		786.7
(-1.6)
P 		558.7
(-3)
P 		865.2
(-1.1)
P 		911.6
(-0.8)
P 		1509.1
(3)
P 		950
B 724.1
(-3)
P 		878.1
(-1.4)
P 		843
(-1.8)
P 		870.3
(-1.5)
P 		896.7
(-1.2)
P 		1305.4
(3)
P 		581
C 777.6
(-2.9)
P 		771.5
(-3)
P 		786
(-2.8)
P 		906.6
(-1.4)
P 		894.1
(-1.6)
P 		1290.2
(3)
P 		519
avr 778.5
(-2.5) 		812.1
(-2.2) 		729.2
(-3) 		880.7
(-1.6) 		900.8
(-1.4) 		1368.2
(3) 		639
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 251
1 2 3 4 range
A 322.1
(3)
P 		135.8
(-1.8)
P 		223
(0.4)
P 		89.7
(-3)
P 		232
B 235.2
(3)
P 		197.6
(0.7)
P 		199
(0.8)
P 		135
(-3)
P 		100
C 281.7
(1.4)
P 		181
(-1.2)
P 		340.3
(3)
P 		114.6
(-3)
P 		226
avr 279.7
(3) 		171.5
(-0.9) 		254.1
(2.1) 		113.1
(-3) 		167

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 365
1 2 3 4 5 6 range
A 153.7
(-2.2)
P 		279.8
(0.9)
P 		121.7
(-3)
P 		219.4
(-0.6)
P 		275.1
(0.7)
P 		367.4
(3)
P 		246
B 252
(-2)
P 		292.3
(-1.1)
P 		204.7
(-3)
P 		230.5
(-2.5)
P 		364.3
(0.4)
P 		486.8
(3)
P 		282
C 288.2
(-0.5)
P 		235.4
(-1.7)
P 		200
(-2.6)
P 		182.3
(-3)
P 		289.3
(-0.4)
P 		431.9
(3)
P 		250
avr 231.3
(-1.7) 		269.2
(-0.8) 		175.5
(-3) 		210.7
(-2.2) 		309.6
(0.2) 		428.7
(3) 		253
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193154_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3986
Sequence Type Exemplar sequence
Representative Public ID F10B5.6 NCBI
Target Description F10B5.6 /REP_DB=WormBase Gene ID /WP=CE01548 /GEN=emb-27 /TR=Q09536 /GB=CAA88313.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=cell division control protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063311(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063311 NCBI Caenorhabditis elegans abnormal EMBroygenesis family member (emb-27) (emb-27) mRNA, complete cds. 11/11 None
SNAP00000014819 ENSEMBL cdna:SNAP chromosome:CEL140:II:8159850:8162091:-1 11/11 None
GENEFINDER00000014828 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8159850:8162090:-1 11/11 None
F10B5.6.1 ENSEMBL cdna:known chromosome:CEL140:II:8159784:8162091:-1 gene:F10B5.6 11/11 None
F10B5.6.2 ENSEMBL cdna:known chromosome:CEL140:II:8159850:8162093:-1 gene:F10B5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8159846-8162087(-) 100.0 100.0
Public Domain and Genome References
Gene Title cell division control protein
Gene Symbol emb-27
Ensembl F10B5.6
Entrez Gene 174314 Entrez gene
SwissProt Q09536 EMBL-EBI
WormBase CE01548 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264293_AT cell division cycle family protein at
ATGENOME1:16176_AT cell division cycle family protein at
CANINE:1587772_AT similar to CDC16 homolog cfa
CANINE_2:CFA.1040.1.A1_AT similar to CDC16 homolog cfa
CANINE_2:CFAAFFX.10703.1.S1_AT similar to CDC16 homolog cfa
CHICKEN:GGAAFFX.12738.1.S1_S_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) gga
HG-U133A:202717_S_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) hs
HG-U133A_2:202717_S_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:202717_S_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) hs
HG-FOCUS:202717_S_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:209659_S_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) hs
HG-U133A:209659_S_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) hs
HG-U133A_2:209659_S_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:209658_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) hs
HG-U133A:209658_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) hs
HG-U133A_2:209658_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) hs
HUGENEFL:U18291_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) hs
U133_X3P:G4502700_3P_A_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) hs
HG-U95AV2:40404_S_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:242359_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) hs
HG-U133B:242359_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) hs
HG-U95E:73489_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) hs
MOE430A:1425554_A_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) mm
MOUSE430_2:1425554_A_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) mm
MOUSE430A_2:1425554_A_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) mm
MU11KSUBA:AA536849_S_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) mm
MG-U74AV2:96236_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) mm
MU11KSUBA:AA536849_R_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) (Cdc16), mRNA mm
MU19KSUBA:TC16256_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) (Cdc16), mRNA mm
RG-U34B:RC_AI012077_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) (predicted) rn
RAE230A:1399074_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) (predicted) rn
RAT230_2:1399074_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) (predicted) rn
RAE230B:1396172_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) (predicted) rn
RAT230_2:1396172_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) (predicted) rn
RAE230B:1380361_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) (predicted) rn
RAT230_2:1380361_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) (predicted) rn
RAE230B:1397156_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) (predicted) rn
RAT230_2:1397156_AT CDC16 cell division cycle 16 homolog (S. cerevisiae) (predicted) rn
YEAST_2:1771119_AT Subunit of the anaphase-promoting complex/cyclosome (APC/C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition; required for sporulation Sc
Protein Similarities
Method ID Description E-Value
blast CAA88313 Hypothetical protein F10B5.6 [Caenorhabditis elegans] ref|NP_495712.1| abnormal EMBroygenesis family member (emb-27) [Caenorhabditis elegans] gb|AAG41979.1| APC6 [Caenorhabditis elegans] 0.0
blast CAE57721 Hypothetical protein CBG00731 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001440 EMBL-EBI TPR repeat 2.1E-8
Pfam IPR001440 EMBL-EBI TPR repeat 2.3E-7
Pfam IPR001440 EMBL-EBI TPR repeat 2.1E-8
Pfam IPR001440 EMBL-EBI TPR repeat 2.3E-7
Sequence
Target Sequence 
>C. ELEGANS:193154_AT
gaagcttgtgtagcctatactgcaaaaagttacgcggaagccgatattttattcagaact
gttttgtatatggttacagagaccgatgaaatcattccaattgaagaagtcttgaaaaag
aaaatcgacgacttttggcacccaatgctcaataacattggccacatagccagacggcaa
ggaaggctgaatgaagcaatcatgttttatcaaaaagctatccgaatggagccaaagttt
gtagatgccattgcatcaactgctctctgttacgcagttctcggcaacattgataaagca
actgaattcttcaataaagctcttgcgatcgatccatttaatgaaacaatccgtcaatgt
ctgtcaaaaatgattcaagcgtcaaaagaaagttattctgttgatcaacaaacgctcccg
cccgcatacaactctgaaacatacttcggtgcacaagaaattcttccgtactgtgcaata
agaaaaccacgaaatgatggattcgttgttccgtccatcgtatcgtcaagccaaccattt
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTTGTGTAGCCTATACTGCAA 673 341 1357 Antisense
CGACTTTTGGCACCCAATGCTCAAT 64 249 1485 Antisense
GCATCAACTGCTCTCTGTTACGCAG 57 301 1609 Antisense
CTGTTACGCAGTTCTCGGCAACATT 366 235 1623 Antisense
AAAGCTCTTGCGATCGATCCATTTA 238 125 1672 Antisense
GAAACAATCCGTCAATGTCTGTCAA 652 355 1699 Antisense
TCTGTTGATCAACAAACGCTCCCGC 106 609 1753 Antisense
GCCCGCATACAACTCTGAAACATAC 15 287 1776 Antisense
GAAATTCTTCCGTACTGTGCAATAA 555 363 1813 Antisense
GATGGATTCGTTGTTCCGTCCATCG 658 407 1852 Antisense
ATCGTATCGTCAAGCCAACCATTTA 223 35 1873 Antisense
Sequence Source Affymetrix Proprietary Database