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[193150_at] glutamate receptor transmembranous domain

Description C08B6.5 /REP_DB=WormBase Gene ID /WP=CE05242 /TR=Q17817 /GB=CAA96588.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=glutamate receptor transmembranous domain
Cluster 6grp_total > 99      4grp_total > 01      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 16.8
(-2)
A 		4.1
(-3)
A 		33.8
(-0.6)
A 		78.2
(3)
A 		74
B 3.8
(3)
A 		2.4
(-1.9)
A 		3.4
(1.6)
A 		2.1
(-3)
A 		2
C 19.8
(-0.1)
A 		14.3
(-0.9)
A 		1
(-3)
A 		39.8
(3)
A 		39
avr 13.5
(-1.8) 		6.9
(-3) 		12.7
(-1.9) 		40
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 17.9
(0.9)
A 		1.2
(-3)
A 		1.6
(-2.9)
A 		1.5
(-2.9)
A 		25
(2.6)
A 		26.7
(3)
A 		26
B 6.8
(-1.2)
A 		3.3
(-2.2)
A 		7.4
(-1)
A 		0.8
(-3)
A 		20.5
(3)
A 		13.2
(0.8)
A 		20
C 1.5
(-3)
A 		15.4
(3)
A 		1.4
(-3)
A 		6
(-1)
A 		3.3
(-2.2)
A 		4.4
(-1.7)
A 		14
avr 8.7
(-0.4) 		6.6
(-1.3) 		3.5
(-2.7) 		2.8
(-3) 		16.3
(3) 		14.8
(2.3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 6.1
(-0)
A 		0.9
(-3)
A 		8.8
(1.5)
A 		11.4
(3)
A 		11
B 1.2
(3)
A 		0.6
(-1.5)
A 		0.8
(0)
A 		0.4
(-3)
A 		1
C 6.6
(2.9)
A 		4.1
(0.6)
A 		0.3
(-3)
A 		6.7
(3)
A 		6
avr 4.6
(0.8) 		1.9
(-3) 		3.3
(-1) 		6.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 3.3
(-0.5)
A 		0.4
(-2.9)
A 		0.3
(-3)
A 		0.4
(-2.9)
A 		7.5
(3)
A 		6.5
(2.2)
A 		7
B 2.4
(-1.4)
A 		1.1
(-2.3)
A 		1.8
(-1.8)
A 		0.2
(-3)
A 		8.3
(3)
A 		4.9
(0.5)
A 		8
C 0.6
(-2.7)
A 		4.7
(3)
A 		0.4
(-3)
A 		1.2
(-1.9)
A 		1.1
(-2)
A 		1.5
(-1.5)
A 		4
avr 2.1
(-1.2) 		2.1
(-1.2) 		0.8
(-2.8) 		0.6
(-3) 		5.6
(3) 		4.3
(1.4) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193150_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12312
Sequence Type Exemplar sequence
Representative Public ID C08B6.5 NCBI
Target Description C08B6.5 /REP_DB=WormBase Gene ID /WP=CE05242 /TR=Q17817 /GB=CAA96588.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=glutamate receptor transmembranous domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073200(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073200 NCBI Caenorhabditis elegans C08B6.5 (C08B6.5) mRNA, complete cds. 11/11 None
SNAP00000004951 ENSEMBL cdna:SNAP chromosome:CEL140:V:10120265:10122095:1 11/11 None
GENEFINDER00000004960 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10120346:10122095:1 11/11 None
C08B6.5 ENSEMBL cdna:known chromosome:CEL140:V:10120346:10122095:1 gene:C08B6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10120345-10122095(+) 100.0 100.0
Public Domain and Genome References
Gene Title glutamate receptor transmembranous domain
Ensembl C08B6.5
Entrez Gene 182390 Entrez gene
SwissProt Q17817 EMBL-EBI
WormBase CE05242 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96588 Hypothetical protein C08B6.5 [Caenorhabditis elegans] ref|NP_505601.1| C08B6.5 [Caenorhabditis elegans] 0.0
blast CAE64734 Hypothetical protein CBG09521 [Caenorhabditis briggsae] 0.0
blast T28066 hypothetical protein ZK867.2 - Caenorhabditis elegans 1.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505601.1 4 106-128,168-190,325-344,369-391
C08B6.5 4 106-128,168-190,325-344,369-391
SNAP00000004951 3 142-164,195-217,396-418
GENEFINDER00000004960 4 106-128,168-190,325-344,369-391
Sequence
Target Sequence 
>C. ELEGANS:193150_AT
ggaaacttatctcacatattattttaatttaactttggaaggttcaacagagaaaaatga
atataacataaaacgtgcattggctatgaacccaattgttgttcgggcaagagaagcaga
tttaattaaagaaattcaaaaaggtggagtattttactcaacttatgatatcgaattttt
acctcaagcagtgagcgtttgggacaaaagacaaggattgacagttataagagatacaag
tggaattcttagttatgttgcgtttggatttagtatcagcaatcgaaaactatgccaaat
gttcaacaaagctctattgaaaattcttcctggtatcgcaagtatcactttgggaccagg
ttatggtacaaaaaaacaaccggaagacataactgttcaagtgaaaaagacgcgtctcag
tttgaaaaaacacttggagcaattattctacatttacttaataggatgtggaattgcact
ggcattttttattattgagaaggttttttttagaatgagagttttgaaaagacaaaaggt
ataccaagttaatcgtcaagaatccgatgtaactccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAACTTATCTCACATATTATTTT 6 529 675 Antisense
AAAACGTGCATTGGCTATGAACCCA 473 131 744 Antisense
AACCCAATTGTTGTTCGGGCAAGAG 587 133 763 Antisense
GATATCGAATTTTTACCTCAAGCAG 485 425 841 Antisense
CTCAAGCAGTGAGCGTTTGGGACAA 188 227 857 Antisense
GGAATTCTTAGTTATGTTGCGTTTG 395 533 916 Antisense
AATTCTTCCTGGTATCGCAAGTATC 69 177 996 Antisense
GCAAGTATCACTTTGGGACCAGGTT 661 319 1012 Antisense
GGAGCAATTATTCTACATTTACTTA 542 519 1110 Antisense
ATTGCACTGGCATTTTTTATTATTG 626 5 1147 Antisense
GTCAAGAATCCGATGTAACTCCAGA 596 463 1229 Antisense
Sequence Source Affymetrix Proprietary Database