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[193149_at]

Description C41G7.5 /REP_DB=WormBase Gene ID /WP=CE20561 /GEN=ahr-1 /TR=O44712 /GB=CAB51463.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=aryl hydrocarbon (AH) receptor
Cluster 6grp_total > 26      4grp_total > 37      6grp_cgc > 14      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 292.7
(3)
A 		236.9
(1)
A 		124.7
(-3)
A 		225.8
(0.6)
A 		168
B 299.6
(3)
A 		267.1
(1.8)
A 		135.3
(-3)
A 		229.2
(0.4)
A 		164
C 185.6
(-1)
A 		189.5
(-0.7)
A 		164.3
(-3)
A 		229.2
(3)
A 		65
avr 259.3
(3) 		231.2
(1.6) 		141.4
(-3) 		228.1
(1.4) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 205.8
(2.6)
A 		219
(3)
A 		37.5
(-3)
A 		44.7
(-2.8)
A 		50.3
(-2.6)
A 		162.2
(1.1)
A 		182
B 206.4
(3)
A 		160.1
(1.4)
A 		149.5
(1)
A 		37.1
(-3)
A 		43.2
(-2.8)
A 		53.4
(-2.4)
A 		169
C 192.7
(3)
A 		183.2
(2.6)
A 		73.1
(-2)
A 		48.2
(-3)
A 		53.1
(-2.8)
A 		107.6
(-0.5)
A 		145
avr 201.6
(3) 		187.4
(2.5) 		86.7
(-1.4) 		43.3
(-3) 		48.9
(-2.8) 		107.7
(-0.6) 		158
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 106.6
(3)
A 		51.4
(-1.5)
A 		32.6
(-3)
A 		33.1
(-3)
A 		74
B 95.5
(3)
A 		66
(0.2)
A 		31.4
(-3)
A 		48.8
(-1.4)
A 		64
C 61.4
(3)
A 		54.5
(1.2)
A 		57.3
(1.9)
A 		38.6
(-3)
A 		23
avr 87.8
(3) 		57.3
(-0.8) 		40.4
(-3) 		40.2
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 37.9
(-0.4)
A 		77.9
(3)
A 		8.2
(-3)
A 		11.3
(-2.7)
A 		15.2
(-2.4)
A 		39.5
(-0.3)
A 		70
B 71.8
(3)
A 		53.3
(1.2)
A 		36.3
(-0.4)
A 		9.8
(-3)
A 		17.5
(-2.3)
A 		19.9
(-2)
A 		62
C 71.4
(3)
A 		55.9
(1.5)
A 		18.6
(-2.1)
A 		9.7
(-3)
A 		17.2
(-2.3)
A 		36
(-0.4)
A 		62
avr 60.4
(2.8) 		62.4
(3) 		21
(-1.8) 		10.3
(-3) 		16.6
(-2.3) 		31.8
(-0.5) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193149_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.583
Sequence Type Exemplar sequence
Representative Public ID C41G7.5 NCBI
Target Description C41G7.5 /REP_DB=WormBase Gene ID /WP=CE20561 /GEN=ahr-1 /TR=O44712 /GB=CAB51463.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=aryl hydrocarbon (AH) receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025865(11), NM_001025866(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025865 NCBI Caenorhabditis elegans Aryl Hydrocarbon Receptor related family member (ahr-1) (ahr-1) mRNA, complete cds. 11/11 None
NM_001025866 NCBI Caenorhabditis elegans Aryl Hydrocarbon Receptor related family member (ahr-1) (ahr-1) mRNA, complete cds. 11/11 None
SNAP00000008720 ENSEMBL cdna:SNAP chromosome:CEL140:I:9534214:9539221:1 11/11 None
C41G7.5 ENSEMBL cdna:known chromosome:CEL140:I:9530677:9539254:1 gene:C41G7.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000008732 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9530631-9539152(+) 96.74 100.0
Public Domain and Genome References
Ensembl C41G7.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB51463 Hypothetical protein C41G7.5a [Caenorhabditis elegans] ref|NP_001021036.1| Aryl Hydrocarbon Receptor related family member (ahr-1) [Caenorhabditis elegans] gb|AAC00000.1| aryl hydrocarbon receptor ortholog AHR-1 [Caenorhabditis elegans] 0.0
blast CAI79126 Hypothetical protein C41G7.5b [Caenorhabditis elegans] ref|NP_001021037.1| Aryl Hydrocarbon Receptor related family member (ahr-1) [Caenorhabditis elegans] 0.0
blast G87883 protein C41G7.5 [imported] - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000014 EMBL-EBI PAS domain 2.3E-10
Pfam IPR000014 EMBL-EBI PAS domain 2.3E-10
Pfam IPR000014 EMBL-EBI PAS domain 2.3E-10
Sequence
Target Sequence 
>C. ELEGANS:193149_AT
tcaatctccacgaaatctccaatcaacagctgcacttccattaccatctgtattgaaaga
tgatcaagattgtttggaaccatcaacatccaattccctattcccatccgttcctgttcc
aactcctacaacaaccaaagcaaatcgccgacgaaaagaaaacagtcatgaaattgttcc
aacaatcccatcaattccaattccaactcattttgatatgcaaatgtttgatccatcatg
gaatcatggagttcatccaccagcatggcctcatgatgtatatcatttgacacaatatcc
tccaacatatccacatccaccaggaactgttggataccctgatgttcaaattgcacctgt
ggattaccctggatggcatccaaatgatatacatatgacacagctgccacacggtttcac
accagatgctcaaaagctcgtcccaccacatccacaaatgagccatttcaccgaatatcc
gaccccttcaacacaccacgatcttcatcatcacccattaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATCTCCACGAAATCTCCAATCA 659 633 1248 Antisense
TGCACTTCCATTACCATCTGTATTG 635 577 1278 Antisense
GAATCATGGAGTTCATCCACCAGCA 655 327 1488 Antisense
TCCACCAGCATGGCCTCATGATGTA 100 589 1503 Antisense
AACATATCCACATCCACCAGGAACT 487 137 1551 Antisense
GCACCTGTGGATTACCCTGGATGGC 243 313 1600 Antisense
ACATATGACACAGCTGCCACACGGT 477 105 1638 Antisense
CCACACGGTTTCACACCAGATGCTC 468 275 1654 Antisense
CCACCACATCCACAAATGAGCCATT 596 273 1690 Antisense
TGAGCCATTTCACCGAATATCCGAC 289 569 1706 Antisense
CGATCTTCATCATCACCCATTAAAA 363 249 1746 Antisense
Sequence Source Affymetrix Proprietary Database