[Home] | [Total List]

[193148_at]

Description F08B1.1 /REP_DB=WormBase Gene ID /WP=CE01899 /CHR=2 /FEA=Sanger Annotation /DEF=locus:vhp-1 protein tyrosine phosphatase (ST.LOUIS) SW:Q10038 protein_id:AAC46719.1
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 28      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 30      6grp_total > 17      4grp_total > 14      6grp_highest_sub > De      6grp_cgc > 12      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1065
1 2 3 4 range
A 1140.5
(3)
P 		440.3
(-3)
P 		462.6
(-2.8)
P 		1072.8
(2.4)
P 		700
B 1011.7
(0.3)
P 		629.9
(-1.9)
P 		426
(-3)
P 		1490.6
(3)
P 		1065
C 1012.7
(1.3)
P 		544.1
(-2.5)
P 		476.9
(-3)
P 		1216.5
(3)
P 		740
avr 1055
(1.5) 		538.1
(-2.4) 		455.2
(-3) 		1260
(3) 		805

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1628
1 2 3 4 5 6 range
A 1063.4
(3)
P 		905.8
(1.7)
P 		314.7
(-3)
P 		516.4
(-1.4)
P 		617.7
(-0.6)
P 		755.5
(0.5)
P 		749
B 1180.7
(3)
P 		747.9
(-0.5)
P 		446.6
(-2.9)
P 		474.6
(-2.6)
P 		430.6
(-3)
P 		558.1
(-2)
P 		750
C 1942.7
(3)
P 		737.4
(-2)
P 		724.4
(-2.1)
P 		496.5
(-3)
P 		642.8
(-2.4)
P 		591.5
(-2.6)
P 		1446
avr 1395.6
(3) 		797
(-1) 		495.2
(-3) 		495.8
(-3) 		563.7
(-2.5) 		635
(-2.1) 		900
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 320
1 2 3 4 range
A 415.3
(3)
P 		95.6
(-3)
P 		120.9
(-2.5)
P 		157
(-1.8)
P 		320
B 322.6
(3)
P 		155.6
(-1.5)
P 		98.7
(-3)
P 		317.6
(2.9)
P 		224
C 335.2
(3)
P 		156.4
(-3)
P 		166.2
(-2.7)
P 		205.1
(-1.4)
P 		179
avr 357.7
(3) 		135.9
(-2.8) 		128.6
(-3) 		226.6
(-0.4) 		229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 652
1 2 3 4 5 6 range
A 196
(0)
P 		322.1
(3)
P 		68.5
(-3)
P 		131
(-1.5)
P 		186.4
(-0.2)
P 		183.9
(-0.3)
P 		254
B 410.8
(3)
P 		249
(-0.2)
P 		108.5
(-3)
P 		125.7
(-2.7)
P 		175
(-1.7)
P 		208.1
(-1)
P 		302
C 720.1
(3)
P 		225
(-1.8)
P 		184.4
(-2.2)
P 		99.8
(-3)
P 		208
(-2)
P 		198
(-2.1)
P 		620
avr 442.3
(3) 		265.4
(-0.3) 		120.5
(-3) 		118.8
(-3) 		189.8
(-1.7) 		196.7
(-1.6) 		324
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193148_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4665
Sequence Type Exemplar sequence
Representative Public ID F08B1.1 NCBI
Target Description F08B1.1 /REP_DB=WormBase Gene ID /WP=CE01899 /CHR=2 /FEA=Sanger Annotation /DEF=locus:vhp-1 protein tyrosine phosphatase (ST.LOUIS) SW:Q10038 protein_id:AAC46719.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062596(11), NM_062597(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062596 NCBI Caenorhabditis elegans VH1 dual-specificity phosphatase family member (vhp-1) (vhp-1) mRNA, complete cds. 11/11 None
NM_062597 NCBI Caenorhabditis elegans VH1 dual-specificity phosphatase family member (vhp-1) (vhp-1) mRNA, complete cds. 11/11 None
F08B1.1a.1 ENSEMBL cdna:known chromosome:CEL140:II:5322977:5340788:1 gene:F08B1.1 11/11 A 
F08B1.1a.2 ENSEMBL cdna:known chromosome:CEL140:II:5322977:5340771:1 gene:F08B1.1 11/11 A 
F08B1.1a.3 ENSEMBL cdna:known chromosome:CEL140:II:5331456:5340217:1 gene:F08B1.1 11/11 None
F08B1.1b ENSEMBL cdna:known chromosome:CEL140:II:5336277:5340217:1 gene:F08B1.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182126 8/11 Cross Hyb Matching Probes None
SNAP00000044008 4/11 Cross Hyb Matching Probes None
GENEFINDER00000044026 4/11 Cross Hyb Matching Probes None
F08B1.1c.1 8/11 Cross Hyb Matching Probes None
F08B1.1c.2 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173904 3 2 NM_062596 174338_at (11), 193148_at (11)
NM_062597 193148_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5334552-5340215(+) 100.0 100.0
Public Domain and Genome References
Ensembl F08B1.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68299 Vh1 dual-specificity phosphatase family protein 1, isoform a [Caenorhabditis elegans] gb|AAS91377.1| VH1-like phosphatase 1 [Caenorhabditis elegans] ref|NP_494997.1| VH1 dual-specificity phosphatase family member (vhp-1) [Caenorhabditis elegans] sp|Q10038|VHP1_CAEEL Tyrosine-protein phosphatase vhp-1 (Vh1 dual-specificity phosphatase family protein 1) 0.0
blast CAE59080 Hypothetical protein CBG02372 [Caenorhabditis briggsae] 0.0
blast AAK68300 Vh1 dual-specificity phosphatase family protein 1, isoform b [Caenorhabditis elegans] ref|NP_494998.1| VH1 dual-specificity phosphatase family member (vhp-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000340 EMBL-EBI Dual specificity protein phosphatase 3.7E-71
Pfam IPR000340 EMBL-EBI Dual specificity protein phosphatase 3.7E-71
Sequence
Target Sequence 
>C. ELEGANS:193148_AT
tccatctactccaattcttaactttaccaacccatgtttcaattctccaatcatcccagt
tgcatctagctcgcgagaagttattctgacccttccaactccagctgcttcatcttcttc
ttcaacatcatctgaaccatcttttgatttctcatcatttgaatcttcatcatcgtcttc
aattgttgtcgagaacccatttttcgccagcacagaagtgcctgctggatcatcatcgat
atccacaccatctggatcacaatcaactccagcatctgcttcttcatcagctgcttctag
atgcagaatgaagggattctttaaagtattcagcaagaaggctccagcttcaacttccac
cccggcttcctcaacccctggaacttcccgagcagctcgtccagaatgtctccgatcatc
cggcatcattatctcagcaccagttcttgcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCATCTACTCCAATTCTTAACTTT 34 591 1296 Antisense
AACCCATGTTTCAATTCTCCAATCA 173 147 1324 Antisense
CAGTTGCATCTAGCTCGCGAGAAGT 630 205 1352 Antisense
GAGAAGTTATTCTGACCCTTCCAAC 674 391 1370 Antisense
TGAACCATCTTTTGATTTCTCATCA 148 575 1428 Antisense
GTTGTCGAGAACCCATTTTTCGCCA 671 435 1480 Antisense
CAGAAGTGCCTGCTGGATCATCATC 405 205 1508 Antisense
GCAAGAAGGCTCCAGCTTCAACTTC 15 321 1628 Antisense
CCAGAATGTCTCCGATCATCCGGCA 394 273 1696 Antisense
TCATCCGGCATCATTATCTCAGCAC 274 621 1711 Antisense
TTATCTCAGCACCAGTTCTTGCAAT 688 679 1724 Antisense
Sequence Source Affymetrix Proprietary Database