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[193147_at] lipopolysaccharide-binding protein like

Description F01G10.10 /REP_DB=WormBase Gene ID /WP=CE09172 /TR=O17768 /GB=CAB02898.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=lipopolysaccharide-binding protein like
Cluster 6grp_total > 82      4grp_total > 57      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 454
1 2 3 4 range
A 34.7
(-2.8)
A 		385.5
(2.3)
P 		432.1
(3)
P 		21.1
(-3)
A 		411
B 2.9
(-3)
A 		355.8
(3)
P 		327.3
(2.5)
P 		18.1
(-2.7)
A 		353
C 4.9
(-3)
A 		301
(0.9)
P 		456.5
(3)
P 		13.7
(-2.9)
A 		452
avr 14.2
(-3) 		347.4
(2.1) 		405.3
(3) 		17.6
(-2.9) 		391

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 420
1 2 3 4 5 6 range
A 51.9
(-3)
A 		290.4
(0.7)
P 		262.7
(0.3)
P 		433.9
(3)
P 		336.7
(1.5)
P 		136.8
(-1.7)
P 		382
B 14.3
(-3)
A 		248.2
(1.2)
P 		176.5
(-0.1)
P 		262.1
(1.5)
P 		345.3
(3)
P 		67.5
(-2)
P 		331
C 24.8
(-3)
A 		197.6
(0.1)
P 		202.7
(0.2)
P 		355
(3)
P 		277.8
(1.6)
P 		128.6
(-1.1)
P 		330
avr 30.3
(-3) 		245.4
(1) 		214
(0.4) 		350.3
(3) 		319.9
(2.4) 		111
(-1.5) 		320
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 12.6
(-2.5)
A 		83.7
(1.4)
P 		112.9
(3)
P 		3.1
(-3)
A 		110
B 0.9
(-3)
A 		87.9
(3)
P 		75.8
(2.2)
P 		3.8
(-2.8)
A 		87
C 1.6
(-3)
A 		86.5
(0.2)
P 		159.1
(3)
P 		2.3
(-3)
A 		158
avr 5
(-2.9) 		86
(1.4) 		115.9
(3) 		3.1
(-3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 9.6
(-3)
A 		103.3
(2.6)
P 		57.2
(-0.2)
P 		110.1
(3)
P 		101.6
(2.5)
P 		33.3
(-1.6)
P 		101
B 5
(-3)
A 		82.6
(0.4)
P 		42.9
(-1.3)
P 		69.4
(-0.1)
P 		140.3
(3)
P 		25.2
(-2.1)
P 		135
C 9.2
(-3)
A 		60.3
(0.8)
P 		51.6
(0.2)
P 		71.4
(1.6)
P 		89.9
(3)
P 		43.1
(-0.5)
P 		81
avr 7.9
(-3) 		82.1
(1.3) 		50.6
(-0.5) 		83.6
(1.4) 		110.6
(3) 		33.9
(-1.5) 		103
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193147_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9131
Sequence Type Exemplar sequence
Representative Public ID F01G10.10 NCBI
Target Description F01G10.10 /REP_DB=WormBase Gene ID /WP=CE09172 /TR=O17768 /GB=CAB02898.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=lipopolysaccharide-binding protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069478(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069478 NCBI Caenorhabditis elegans F01G10.10 (F01G10.10) mRNA, complete cds. 11/11 None
SNAP00000013162 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10246133:10249646:1 11/11 None
GENEFINDER00000013174 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10246133:10250001:1 11/11 None
F01G10.10 ENSEMBL cdna:known chromosome:CEL140:IV:10246763:10249726:1 gene:F01G10.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10246768-10249652(+) 100.0 100.0
Public Domain and Genome References
Gene Title lipopolysaccharide-binding protein like
Ensembl F01G10.10
Entrez Gene 177907 Entrez gene
SwissProt O17768 EMBL-EBI
WormBase CE36123 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8289 lipid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02898 Hypothetical protein F01G10.10 [Caenorhabditis elegans] ref|NP_501879.2| F01G10.10 [Caenorhabditis elegans] 0.0
blast CAE59900 Hypothetical protein CBG03384 [Caenorhabditis briggsae] 0.0
blast NP_500850 C55C3.1 [Caenorhabditis elegans] gb|AAA96173.1| Hypothetical protein C55C3.1 [Caenorhabditis elegans] 2.0E-41
blast NP_500850 C55C3.1 [Caenorhabditis elegans] gb|AAA96173.1| Hypothetical protein C55C3.1 [Caenorhabditis elegans] 3.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 1.3E-58
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 1.8E-21
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 6.9E-44
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 1.3E-58
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 1.8E-21
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 6.9E-44
Sequence
Target Sequence 
>C. ELEGANS:193147_AT
aatgttagaattccacctccacatggagttcatatgattgaattctatgcaagtgattat
ctggctaattcaatgttgtatcattcatatcgtcaaaagttccttgacgtcacagttgga
cccgaaagttctccacagcttcaaggacttttgcttacaagttgtggtcctgctggtttc
tgtcttggagagttccttggtacacttggagaacaattcccggatagacaagttgaaatt
gaatttttcgcaaagaaagctccactaattgtgttcattgatgataggtctcggtttaga
ctccatggaggtcttaatatgtacgtaagaccttcgaagccaaatcaagttaaacagcag
ctccttgaaacaaaaatcaacgatgtcgaccaagattcattttccgacttgggattattt
ggtgctgaatttttagagaagcttctcactgaaattcttcaaatgggaattgctctgcca
accatgcaaggtgtaattctgaagagtccaaaattaactttccacgatcgttatctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGTTAGAATTCCACCTCCACATG 109 165 847 Antisense
GTTCCTTGACGTCACAGTTGGACCC 37 303 945 Antisense
GTTGGACCCGAAAGTTCTCCACAGC 215 435 961 Antisense
GTTCTCCACAGCTTCAAGGACTTTT 383 443 974 Antisense
TACAAGTTGTGGTCCTGCTGGTTTC 72 643 1002 Antisense
GCTGGTTTCTGTCTTGGAGAGTTCC 135 295 1018 Antisense
GGAGAGTTCCTTGGTACACTTGGAG 506 515 1033 Antisense
GATAGGTCTCGGTTTAGACTCCATG 441 425 1129 Antisense
GATGTCGACCAAGATTCATTTTCCG 624 407 1228 Antisense
AATTGCTCTGCCAACCATGCAAGGT 71 179 1314 Antisense
TTAACTTTCCACGATCGTTATCTGA 392 683 1360 Antisense
Sequence Source Affymetrix Proprietary Database